SRR3548608_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548608_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744014
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13795	1.854131777090216	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2909	0.39098726636864356	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2461	0.33077334566285044	No Hit
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	1699	0.22835591803380043	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1342	0.18037294997137152	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT	1018	0.13682538231807467	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1016	0.13655657017206665	No Hit
AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	864	0.11612684707545824	No Hit
CCGGGAAGGGCTCTAGTATTAATAAATATTAGCCCACCAACAGCTACCATT	847	0.11384194383439021	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC	776	0.10429911265110603	No Hit
ACTTCAGGGATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGC	754	0.10134217904501797	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGT	35	1.2111559E-7	45.000004	14
CTATCGA	35	1.2111559E-7	45.000004	17
GCGCCTA	35	1.2111559E-7	45.000004	9
CACGATT	35	1.2111559E-7	45.000004	36
ACCGTTG	35	1.2111559E-7	45.000004	34
TCGACCG	35	1.2111559E-7	45.000004	24
TATCGAT	35	1.2111559E-7	45.000004	18
TATTTCG	20	7.0316816E-4	45.0	30
AATCCCG	50	2.1827873E-11	45.0	1
CGAACTT	20	7.0316816E-4	45.0	34
CGAACGA	45	3.8380676E-10	45.0	27
CGAACAG	40	6.8102963E-9	45.0	1
ACGCCAT	40	6.8102963E-9	45.0	17
GTCGATC	20	7.0316816E-4	45.0	30
GATCGGC	25	3.8894752E-5	45.0	20
GTCGAAT	20	7.0316816E-4	45.0	9
CGAAACT	25	3.8894752E-5	45.0	44
ACGTTGC	45	3.8380676E-10	45.0	33
CGTGCGA	45	3.8380676E-10	45.0	45
CCTAGCG	20	7.0316816E-4	45.0	1