SRR3548606_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548606_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410606
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17755	4.324096579202448	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3834	0.9337418352386473	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2883	0.7021329449642723	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1966	0.4788044987165312	No Hit
CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT	1937	0.4717417670467553	TruSeq Adapter, Index 15 (95% over 23bp)
AATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGT	1888	0.45980818594954775	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCC	1610	0.3921033789082478	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	1233	0.30028786720116124	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	632	0.15391884190684013	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	542	0.1320000194833977	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	522	0.12712917005596605	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	472	0.11495204648738694	No Hit
ATCCTAGCTGAGTAATTTCTGCTTCCTAGAACCATTGGTTATTACACTTTT	460	0.11202953683092795	No Hit
ACAGCAGAGGGATGAATGCCGCTGCCCAGCTTGCTTTTTTGTTTGTTTGTT	459	0.11178599435955636	No Hit
TTCGAAGGGGGAATATGGGAAGAAAACTGAAAATCATGGAAATTGAGAAAC	454	0.11056828200269844	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	436	0.10618451751800996	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACTA	70	0.0	45.000004	44
CGAACAG	35	1.2093733E-7	45.000004	1
TACTTAG	35	1.2093733E-7	45.000004	1
TACCAGC	35	1.2093733E-7	45.000004	17
CGTGCCG	30	2.16208E-6	45.000004	27
TAGACGC	30	2.16208E-6	45.000004	28
TCCGAAC	35	1.2093733E-7	45.000004	35
TATGGGC	60	0.0	45.000004	4
ATTACTC	65	0.0	45.000004	30
CGGCACG	35	1.2093733E-7	45.000004	1
ACATTAC	35	1.2093733E-7	45.000004	29
TAAGTAA	30	2.16208E-6	45.000004	14
TGCGGTC	30	2.16208E-6	45.000004	10
ACCCTAT	35	1.2093733E-7	45.000004	29
GTAGACG	30	2.16208E-6	45.000004	27
CCTCATA	35	1.2093733E-7	45.000004	10
CGCTACA	35	1.2093733E-7	45.000004	30
TGTTCGG	30	2.16208E-6	45.000004	2
GAAACGT	30	2.16208E-6	45.000004	19
AACGCCT	30	2.16208E-6	45.000004	32