SRR3548603_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548603_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	518191
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14865	2.8686333803558917	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3435	0.6628829910206855	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2736	0.5279906443763014	No Hit
CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT	1755	0.33867820938611437	TruSeq Adapter, Index 13 (96% over 25bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1750	0.33771331420267814	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	785	0.15148854379948706	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGT	739	0.14261150811187379	No Hit
AATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT	678	0.1308397868739519	TruSeq Adapter, Index 13 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCC	595	0.11482252682891057	No Hit
AGCTAGGGGGTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCTCTCTTGCTTC	543	0.10478761692117385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCC	20	7.0296956E-4	45.000004	18
AATCCGA	20	7.0296956E-4	45.000004	14
CCTTACG	35	1.2101918E-7	45.000004	1
TACCCGT	20	7.0296956E-4	45.000004	42
ACGCCTA	35	1.2101918E-7	45.000004	27
GCGACCG	65	0.0	45.000004	32
CGTATAA	35	1.2101918E-7	45.000004	17
GTCGAGA	20	7.0296956E-4	45.000004	27
CGAAATA	20	7.0296956E-4	45.000004	30
CCGATTC	20	7.0296956E-4	45.000004	44
ACCGCGC	65	0.0	45.000004	35
GACGTAA	20	7.0296956E-4	45.000004	32
ACTCTAC	30	2.1631859E-6	45.000004	35
TTGTCGA	20	7.0296956E-4	45.000004	25
TCTTACG	60	0.0	45.000004	1
TTGTCCG	80	0.0	45.000004	12
CTCCCGT	20	7.0296956E-4	45.000004	44
TTCCGGT	30	2.1631859E-6	45.000004	45
CGATTGT	35	1.2101918E-7	45.000004	24
CCGCTTA	20	7.0296956E-4	45.000004	25