##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548603_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 518191 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.57043059412456 31.0 31.0 34.0 30.0 34.0 2 31.784673990864373 31.0 31.0 34.0 30.0 34.0 3 31.956770765991692 33.0 31.0 34.0 30.0 34.0 4 35.70090179103844 37.0 35.0 37.0 33.0 37.0 5 35.46611577584327 37.0 35.0 37.0 33.0 37.0 6 32.499966228668576 37.0 35.0 37.0 25.0 37.0 7 34.128338778558486 37.0 35.0 37.0 26.0 37.0 8 35.286593167384225 37.0 35.0 37.0 32.0 37.0 9 37.163951129988746 39.0 37.0 39.0 34.0 39.0 10 36.57574909637566 38.0 35.0 39.0 32.0 39.0 11 36.628854997481625 39.0 35.0 39.0 32.0 39.0 12 36.721932646456615 39.0 35.0 39.0 32.0 39.0 13 36.733675420839035 39.0 37.0 39.0 32.0 39.0 14 37.844954852554366 40.0 37.0 41.0 33.0 41.0 15 37.872666642222654 40.0 37.0 41.0 33.0 41.0 16 37.816866753764536 40.0 37.0 41.0 33.0 41.0 17 37.76881883321015 39.0 37.0 41.0 33.0 41.0 18 37.59573400541499 39.0 36.0 41.0 33.0 41.0 19 37.52894975018864 39.0 36.0 41.0 32.0 41.0 20 37.391847793574186 39.0 36.0 41.0 32.0 41.0 21 37.35848750750206 39.0 35.0 41.0 32.0 41.0 22 37.28695210839246 39.0 35.0 41.0 32.0 41.0 23 37.099048420370096 39.0 35.0 40.0 32.0 41.0 24 36.9925085537958 39.0 35.0 40.0 31.0 41.0 25 37.02512008120558 39.0 35.0 40.0 31.0 41.0 26 36.951228408058036 39.0 35.0 40.0 31.0 41.0 27 36.892460502015666 39.0 35.0 40.0 31.0 41.0 28 36.80017406709109 39.0 35.0 40.0 31.0 41.0 29 36.63495892441204 39.0 35.0 40.0 31.0 41.0 30 36.65990339469423 39.0 35.0 40.0 31.0 41.0 31 36.22805876597625 38.0 35.0 40.0 30.0 41.0 32 36.30165518119767 38.0 35.0 40.0 30.0 41.0 33 36.281770621257415 38.0 35.0 40.0 30.0 41.0 34 36.20128678421663 38.0 35.0 40.0 30.0 41.0 35 36.171703097892475 38.0 35.0 40.0 30.0 41.0 36 36.099725776788866 38.0 35.0 40.0 30.0 41.0 37 36.01449272565521 38.0 35.0 40.0 30.0 41.0 38 35.90889652657032 38.0 35.0 40.0 29.0 41.0 39 35.84446082622045 38.0 35.0 40.0 29.0 41.0 40 35.74379717131328 38.0 35.0 40.0 28.0 41.0 41 35.7174593923862 38.0 35.0 40.0 28.0 41.0 42 35.593078613870176 38.0 35.0 40.0 28.0 41.0 43 35.52348072428892 38.0 35.0 40.0 27.0 41.0 44 35.319691001966454 38.0 34.0 40.0 26.0 41.0 45 35.09268783132088 38.0 34.0 40.0 26.0 41.0 46 34.86099719987418 38.0 34.0 40.0 25.0 41.0 47 34.837718138678596 38.0 34.0 40.0 25.0 41.0 48 34.836535177183706 38.0 34.0 40.0 25.0 41.0 49 34.69383875829568 37.0 33.0 40.0 25.0 41.0 50 34.5623949470369 37.0 33.0 40.0 24.0 41.0 51 33.518552039691926 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 2.0 12 4.0 13 3.0 14 14.0 15 29.0 16 76.0 17 183.0 18 316.0 19 707.0 20 1147.0 21 1708.0 22 2351.0 23 2953.0 24 3772.0 25 4225.0 26 4889.0 27 5765.0 28 6983.0 29 8699.0 30 11226.0 31 14259.0 32 18741.0 33 25118.0 34 35516.0 35 50814.0 36 54310.0 37 71750.0 38 96014.0 39 96587.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.526952417158924 33.691052141005926 21.0462937411109 26.735701700724253 2 22.529723596125752 34.016414796860616 19.610143750084426 23.843717856929203 3 18.396498588358345 36.30514617197134 20.036241463089866 25.262113776580453 4 18.22667703607357 37.07783423486707 19.299447501017962 25.396041228041398 5 16.72510715161012 38.97848476719974 16.02883878724254 28.2675692939476 6 16.353622505987175 46.29875856585699 16.679178140878555 20.66844078727728 7 82.60486963301177 11.326711579321138 3.2918364078110196 2.7765823798560763 8 83.95552991078578 10.35930766840798 2.56970885252735 3.1154535682788778 9 77.30354251617648 14.6723891383679 5.007806002033998 3.016262343421634 10 28.585019809298117 49.19807561304616 10.026997767232546 12.189906810423183 11 16.96613796843249 32.520634283497785 33.08548392388135 17.42774382418838 12 22.69954514841053 29.48410914122399 30.1859738976555 17.630371812709985 13 22.07274923725036 30.750437579965688 27.46979395628253 19.707019226501423 14 18.39283198666129 33.686227665088744 28.1828514968419 19.738088851408072 15 16.90380573958251 37.11160556628734 26.52342476036828 19.461163933761874 16 19.695247505263502 34.26748052359072 26.574950163163773 19.462321807982 17 18.213940419652214 35.638789558290284 26.876962355579316 19.27030766647819 18 18.529847102709233 33.65728080958566 27.61259844343109 20.200273644274024 19 18.637529405180715 36.56180829076538 25.420163607627305 19.380498696426606 20 19.3745163462893 35.83099667883078 27.14558917464796 17.64889780023196 21 19.88243717085013 36.00969526680316 26.696526956276738 17.411340606069963 22 20.735211533971064 32.06288800847564 26.318674002443114 20.883226455110183 23 17.579425347024554 36.31151448018202 25.062187494572463 21.046872678220964 24 16.31946521649353 36.44119639283584 27.63421209554006 19.60512629513056 25 18.20236167745098 36.31402320765895 25.05890685094878 20.424708263941287 26 20.026978469328878 35.867276737727984 23.81149035780243 20.29425443514071 27 17.35923626616441 34.641087938617225 25.482109878403907 22.517565916814455 28 16.768141476791378 36.65598206066875 27.176851778591292 19.399024683948582 29 18.64852921027189 35.566615398569255 24.87615570320596 20.908699687952897 30 19.225729509003436 34.367057706521344 26.143256058094412 20.263956726380812 31 20.40830504582287 35.35974187124053 23.491145156901606 20.740807926034996 32 20.206641952484702 33.9909415640179 24.12604618760264 21.676370295894756 33 18.786895179576643 34.17735931345778 23.954101865914307 23.081643641051272 34 16.82198262802712 35.114272536574354 27.08634461038497 20.977400225013557 35 18.25813261905359 34.46489807812178 25.85320856595348 21.423760736871152 36 18.75621151274337 36.82889127754052 24.043837117973872 20.371060091742237 37 17.563215107942824 36.71252491841811 24.801086857934624 20.92317311570444 38 18.1778533397917 35.5764573294403 25.914575899620022 20.331113431147973 39 18.03061033479933 33.104009911403324 26.31828804436974 22.547091709427605 40 20.110924350287828 33.861838588474136 25.0419246957203 20.985312365517732 41 17.9871900515447 32.55537051010149 27.749227601405657 21.708211836948152 42 19.508829755823626 32.56308967156898 25.359375211070823 22.568705361536576 43 18.8389995194822 33.80162912902772 26.12588794479256 21.23348340669753 44 19.596249259442946 32.2103239925047 24.515863841710875 23.677562906341485 45 19.767807623057905 33.87303137260199 26.29879716166433 20.06036384267577 46 18.57133759559699 33.209183486397876 26.831805260994496 21.387673657010637 47 18.04952228039468 33.43921449812907 26.73087722480707 21.78038599666918 48 18.55589927266201 32.433600737951835 28.07169557171004 20.938804417676106 49 18.65412560233582 32.14393920388428 27.89550571121459 21.30642948256531 50 18.108380886584293 30.860049672804042 28.064362368315933 22.967207072295736 51 17.82547361880079 30.563247914379062 28.496249452421985 23.115029014398168 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 17125.0 1 13043.5 2 8962.0 3 5649.5 4 2337.0 5 2035.0 6 1733.0 7 1940.5 8 2148.0 9 2454.5 10 2761.0 11 2966.5 12 3172.0 13 3432.5 14 3693.0 15 3821.5 16 3950.0 17 3758.5 18 3567.0 19 3644.0 20 3721.0 21 3727.0 22 3733.0 23 3712.0 24 3691.0 25 4329.5 26 5663.5 27 6359.0 28 9046.5 29 11734.0 30 11697.0 31 11660.0 32 13353.0 33 15046.0 34 16841.0 35 18636.0 36 20226.5 37 21817.0 38 22486.0 39 23155.0 40 24021.0 41 24887.0 42 26202.0 43 27517.0 44 30349.0 45 33181.0 46 35585.5 47 37990.0 48 39650.0 49 41310.0 50 42270.0 51 43230.0 52 39445.0 53 35660.0 54 30890.5 55 26121.0 56 22571.0 57 19021.0 58 17332.5 59 15644.0 60 13856.5 61 12069.0 62 10338.5 63 8608.0 64 7350.5 65 6093.0 66 5471.0 67 4849.0 68 3731.0 69 2613.0 70 2213.0 71 1813.0 72 1560.0 73 1307.0 74 1182.0 75 809.5 76 562.0 77 423.5 78 285.0 79 194.5 80 104.0 81 103.5 82 103.0 83 111.0 84 119.0 85 78.0 86 37.0 87 28.0 88 19.0 89 17.0 90 15.0 91 11.0 92 7.0 93 4.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 518191.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.300574629600288 #Duplication Level Percentage of deduplicated Percentage of total 1 76.63782745875233 21.688945554468507 2 8.92974477174696 5.0543381667221565 3 3.4456858256044596 2.925446665730247 4 1.929258669211858 2.1839651579133412 5 1.2361865888137589 1.7492395406417394 6 0.9152961333474031 1.5542043917989656 7 0.6742377305857326 1.33569206487737 8 0.5804466098179392 1.3141578079720855 9 0.4469537861346613 1.1384144082437753 >10 4.1027176108401955 24.480950939007677 >50 0.7031187597600738 13.819212313441188 >100 0.3916191913398447 17.305583509550512 >500 0.003453432022397219 0.6528638593297345 >1k 0.002762745617917775 1.8913505098426677 >5k 0.0 0.0 >10k+ 6.906864044794438E-4 2.9056351104600306 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 14865 2.8686333803558917 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3435 0.6628829910206855 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2736 0.5279906443763014 No Hit CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT 1755 0.33867820938611437 TruSeq Adapter, Index 13 (96% over 25bp) TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1750 0.33771331420267814 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 785 0.15148854379948706 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGT 739 0.14261150811187379 No Hit AATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT 678 0.1308397868739519 TruSeq Adapter, Index 13 (95% over 22bp) AATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCC 595 0.11482252682891057 No Hit AGCTAGGGGGTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCTCTCTTGCTTC 543 0.10478761692117385 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9297903668724466E-4 0.0 0.0 0.39927362690590923 0.0 2 1.9297903668724466E-4 0.0 0.0 0.5235521265324947 0.0 3 1.9297903668724466E-4 0.0 0.0 0.6883562238634017 0.0 4 1.9297903668724466E-4 0.0 0.0 1.4564127898786354 0.0 5 1.9297903668724466E-4 0.0 0.0 1.5770246878081633 0.0 6 1.9297903668724466E-4 0.0 0.0 2.3273271824481707 0.0 7 1.9297903668724466E-4 0.0 0.0 2.9195798460413247 0.0 8 1.9297903668724466E-4 0.0 0.0 3.442938993537132 0.0 9 1.9297903668724466E-4 0.0 0.0 4.306713161749239 0.0 10 1.9297903668724466E-4 0.0 0.0 5.428693281048879 0.0 11 1.9297903668724466E-4 0.0 0.0 6.5126565301211325 0.0 12 1.9297903668724466E-4 0.0 0.0 7.002051367159986 0.0 13 1.9297903668724466E-4 0.0 0.0 7.210661705818897 0.0 14 1.9297903668724466E-4 0.0 0.0 7.4154124637440635 0.0 15 1.9297903668724466E-4 0.0 0.0 7.591988282312892 0.0 16 1.9297903668724466E-4 0.0 0.0 7.97177102651339 0.0 17 1.9297903668724466E-4 0.0 0.0 8.528322568319403 0.0 18 1.9297903668724466E-4 0.0 0.0 9.177890005808669 0.0 19 1.9297903668724466E-4 0.0 0.0 9.483761778957952 0.0 20 3.859580733744893E-4 0.0 0.0 9.779791621236186 0.0 21 3.859580733744893E-4 0.0 0.0 10.104575339980817 0.0 22 3.859580733744893E-4 0.0 0.0 10.51272600257434 0.0 23 3.859580733744893E-4 0.0 0.0 10.907947069709817 0.0 24 3.859580733744893E-4 0.0 0.0 11.178310700108646 0.0 25 3.859580733744893E-4 0.0 0.0 11.422236202481324 0.0 26 3.859580733744893E-4 0.0 0.0 11.664424893523817 0.0 27 3.859580733744893E-4 0.0 0.0 11.916455515437358 0.0 28 3.859580733744893E-4 0.0 0.0 12.19164362175337 0.0 29 3.859580733744893E-4 0.0 0.0 12.489410275361788 0.0 30 3.859580733744893E-4 0.0 0.0 12.835421688142016 0.0 31 3.859580733744893E-4 0.0 0.0 13.115820228448584 0.0 32 3.859580733744893E-4 0.0 0.0 13.400657286598957 0.0 33 3.859580733744893E-4 0.0 0.0 13.6798979526854 0.0 34 3.859580733744893E-4 0.0 0.0 13.953156268634539 0.0 35 3.859580733744893E-4 0.0 0.0 14.25767718852701 0.0 36 3.859580733744893E-4 0.0 0.0 14.539619561127076 0.0 37 3.859580733744893E-4 0.0 0.0 14.819825122396955 0.0 38 3.859580733744893E-4 0.0 0.0 15.129363497243295 0.0 39 3.859580733744893E-4 0.0 0.0 15.452989341767804 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGCC 20 7.0296956E-4 45.000004 18 AATCCGA 20 7.0296956E-4 45.000004 14 CCTTACG 35 1.2101918E-7 45.000004 1 TACCCGT 20 7.0296956E-4 45.000004 42 ACGCCTA 35 1.2101918E-7 45.000004 27 GCGACCG 65 0.0 45.000004 32 CGTATAA 35 1.2101918E-7 45.000004 17 GTCGAGA 20 7.0296956E-4 45.000004 27 CGAAATA 20 7.0296956E-4 45.000004 30 CCGATTC 20 7.0296956E-4 45.000004 44 ACCGCGC 65 0.0 45.000004 35 GACGTAA 20 7.0296956E-4 45.000004 32 ACTCTAC 30 2.1631859E-6 45.000004 35 TTGTCGA 20 7.0296956E-4 45.000004 25 TCTTACG 60 0.0 45.000004 1 TTGTCCG 80 0.0 45.000004 12 CTCCCGT 20 7.0296956E-4 45.000004 44 TTCCGGT 30 2.1631859E-6 45.000004 45 CGATTGT 35 1.2101918E-7 45.000004 24 CCGCTTA 20 7.0296956E-4 45.000004 25 >>END_MODULE