SRR3548600_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548600_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	355956
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12078	3.3931160031015066	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2697	0.757677915247952	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2131	0.5986694984773399	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	1461	0.4104439874591242	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1427	0.40089224510894605	No Hit
TAAGTAGGGATTTATATGGATTCCTTTTATTTTTAGTTCAGAAAGAAAGAA	423	0.1188349121801571	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC	374	0.10506916585195922	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT	362	0.10169796266954344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCCGAT	65	0.0	45.000004	10
CGAGGCT	65	0.0	45.000004	4
TCCGGAC	20	7.0267176E-4	45.0	18
TCACGCC	25	3.885363E-5	45.0	43
CTAGACT	20	7.0267176E-4	45.0	41
CTATGCG	25	3.885363E-5	45.0	1
TCGTTGA	25	3.885363E-5	45.0	24
TTGGCGG	20	7.0267176E-4	45.0	2
TCGTTAG	20	7.0267176E-4	45.0	16
GTACCCG	70	0.0	45.0	1
CAAACGA	20	7.0267176E-4	45.0	17
ACGCCTC	25	3.885363E-5	45.0	45
GCGACTC	20	7.0267176E-4	45.0	28
GTCGATG	20	7.0267176E-4	45.0	9
GGTCGAT	20	7.0267176E-4	45.0	8
TGCCACG	25	3.885363E-5	45.0	1
TAGACTT	40	6.7921064E-9	45.0	12
ACGTTAA	25	3.885363E-5	45.0	22
TAGACGG	40	6.7921064E-9	45.0	2
GCAACGC	20	7.0267176E-4	45.0	43