##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548600_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 355956 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62407432379283 31.0 31.0 34.0 30.0 34.0 2 31.820039555450673 33.0 31.0 34.0 30.0 34.0 3 31.9979295193788 33.0 31.0 34.0 30.0 34.0 4 35.727598354852844 37.0 35.0 37.0 33.0 37.0 5 35.469583319286656 37.0 35.0 37.0 33.0 37.0 6 34.00158446549573 37.0 35.0 37.0 32.0 37.0 7 34.894686421917314 37.0 35.0 37.0 32.0 37.0 8 35.62606052433447 37.0 35.0 37.0 32.0 37.0 9 37.342399060558044 39.0 37.0 39.0 34.0 39.0 10 36.754562361640204 38.0 37.0 39.0 32.0 39.0 11 36.780231264538315 39.0 37.0 39.0 32.0 39.0 12 36.783082740563444 39.0 37.0 39.0 32.0 39.0 13 36.77007551495129 39.0 37.0 39.0 32.0 39.0 14 37.96629077751183 40.0 37.0 41.0 33.0 41.0 15 37.92480250368023 40.0 37.0 41.0 33.0 41.0 16 37.83805301778872 40.0 37.0 41.0 33.0 41.0 17 37.78940936520244 39.0 37.0 41.0 33.0 41.0 18 37.60205755767567 39.0 37.0 41.0 33.0 41.0 19 37.48122520760993 39.0 36.0 41.0 32.0 41.0 20 37.38364292215892 39.0 35.0 40.0 32.0 41.0 21 37.353664497859285 39.0 35.0 40.0 32.0 41.0 22 37.33210284417175 39.0 35.0 40.0 32.0 41.0 23 37.1540639854364 39.0 35.0 40.0 32.0 41.0 24 36.99937351807527 39.0 35.0 40.0 31.0 41.0 25 37.08258324062525 39.0 35.0 40.0 32.0 41.0 26 36.97982615828923 39.0 35.0 40.0 31.0 41.0 27 36.94538650844486 39.0 35.0 40.0 31.0 41.0 28 36.91264931620762 39.0 35.0 40.0 31.0 41.0 29 36.709110114733285 39.0 35.0 40.0 31.0 41.0 30 36.75123329849757 39.0 35.0 40.0 31.0 41.0 31 36.62867039746485 39.0 35.0 40.0 31.0 41.0 32 36.54261762689771 39.0 35.0 40.0 31.0 41.0 33 36.472670779534546 39.0 35.0 40.0 30.0 41.0 34 36.3629605906348 38.0 35.0 40.0 30.0 41.0 35 36.236282012383555 38.0 35.0 40.0 30.0 41.0 36 36.14168605108497 38.0 35.0 40.0 30.0 41.0 37 36.118851768196066 38.0 35.0 40.0 30.0 41.0 38 35.98787209655126 38.0 35.0 40.0 30.0 41.0 39 35.91925406510917 38.0 35.0 40.0 29.0 41.0 40 35.7997505309645 38.0 35.0 40.0 29.0 41.0 41 35.670838530604904 38.0 35.0 40.0 28.0 41.0 42 35.512167234152535 38.0 35.0 40.0 27.0 41.0 43 35.40864320309252 38.0 34.0 40.0 27.0 41.0 44 35.3258633089483 38.0 34.0 40.0 27.0 41.0 45 35.235737001202395 38.0 34.0 40.0 26.0 41.0 46 35.041985526301005 38.0 34.0 40.0 26.0 41.0 47 34.97417377428671 38.0 34.0 40.0 26.0 41.0 48 34.82135151535583 37.0 34.0 40.0 25.0 41.0 49 34.64616132330962 37.0 33.0 40.0 24.0 41.0 50 34.51387531043163 37.0 33.0 40.0 24.0 41.0 51 33.434233444583036 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 3.0 12 4.0 13 6.0 14 11.0 15 15.0 16 50.0 17 83.0 18 199.0 19 386.0 20 682.0 21 1018.0 22 1438.0 23 1897.0 24 2314.0 25 2690.0 26 3148.0 27 3717.0 28 4556.0 29 5743.0 30 7329.0 31 9690.0 32 12468.0 33 16819.0 34 24132.0 35 36098.0 36 37107.0 37 48249.0 38 67294.0 39 68802.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.38582296688355 33.66989178437784 22.179145737113576 24.76513951162503 2 22.743541336569688 34.38964366382362 20.654238164267493 22.2125768353392 3 20.281439279012012 35.26081875287957 19.962298711076652 24.495443257031766 4 19.28075380103159 37.60886176943218 18.623931047657578 24.486453381878658 5 16.63716863882053 39.97572733708661 15.737619256312577 27.649484767780287 6 17.11559855712504 45.90426906696333 17.251289485217274 19.728842890694356 7 81.71768420816056 11.40562316690827 3.8510377687129873 3.025654856218184 8 82.92963175223905 11.173291080920114 2.9267662295339876 2.9703109373068584 9 76.56929508141455 14.72766296958051 5.595073548416096 3.107968400588837 10 28.67180213284788 48.24247940756723 9.803177920866624 13.28254053871827 11 18.252536830394767 33.8024924428862 30.91589971794267 17.029071008776366 12 22.773882165211432 30.933598534650354 30.59254514602928 15.699974154108935 13 24.374360876063335 32.147793547517104 25.705424265920506 17.772421310499052 14 19.20237332704042 33.9808852779557 27.82675386845565 18.989987526548223 15 18.347773320298014 37.23212981379721 26.55496746788929 17.865129398015487 16 21.24167031880345 34.54752834620009 26.34820033936779 17.86260099562867 17 19.349301599074042 34.86919731652227 26.69431053276248 19.087190551641214 18 19.82632684938588 33.873006776118395 27.28651855847352 19.014147816022206 19 18.774792390070683 38.05779365989055 26.346514737776577 16.820899212262187 20 20.24435604400544 36.32977109530391 24.709233725516636 18.71663913517401 21 20.75902639652092 35.337232691680995 27.020474440661207 16.88326647113688 22 19.02875636314601 33.06110867635326 26.058557799278564 21.851577161222174 23 18.501163065097934 36.03310521525132 25.668621964512468 19.797109755138276 24 16.868376990414546 36.44045893312657 27.58683657530706 19.104327501151825 25 19.21080133499646 36.16008720178899 25.10759756823877 19.521513894975783 26 20.707053680792008 37.315005225364935 23.74478868174718 18.233152412095876 27 17.528009079773906 35.69823236579802 25.501747406982883 21.27201114744519 28 18.019923810808077 35.95584847565429 26.455516974008024 19.568710739529603 29 18.180617829169897 37.65437301239479 25.12613918574206 19.038869972693252 30 21.626268415197384 34.54359527582061 24.99690973041612 18.83322657856589 31 19.234118823674837 37.348998190787626 23.00509051680545 20.41179246873209 32 21.096146714762497 35.18496668127521 24.300756273247256 19.418130330715034 33 19.77800627043792 33.990156086707344 26.416748137410238 19.815089505444494 34 18.729000213509536 36.17385294811719 24.774972187573745 20.32217465079954 35 20.060906404162314 34.837732753486385 25.501747406982883 19.599613435368415 36 20.75172212295902 36.43961613233096 24.632538853116678 18.176122891593344 37 21.240265650810773 36.08760633336704 22.896369214172537 19.775758801649644 38 20.52107563856207 35.31953387497332 25.155075346391126 19.00431514007349 39 20.414320871118903 34.36997831192619 24.535897695220758 20.679803121734146 40 22.351077099416784 33.922451089460495 24.61146883322658 19.115002977896147 41 20.95202777871422 32.590544898807714 26.44034655968715 20.017080762790908 42 20.802290170695255 35.011630650979335 24.461450291609076 19.724628886716335 43 18.93351987324276 34.62956095697221 26.00827068514086 20.428648484644167 44 21.01973277596107 33.33501893492454 24.863747204710695 20.78150108440369 45 21.950184854307835 33.71849329692434 25.32532110710313 19.0060007416647 46 19.65074335030172 34.0238681185315 26.73757430693681 19.58781422422996 47 20.10726044792053 34.44274011394667 25.508208879749183 19.94179055838362 48 19.570677274719348 33.38137297868276 27.092393441886074 19.95555630471182 49 20.87926597669375 32.29135061636831 25.82285451010799 21.006528896829945 50 19.86565755318073 31.564294463360643 26.51057995932081 22.059468024137814 51 20.734866107046937 31.06591825956017 27.372484239625123 20.82673139376777 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 13890.0 1 10326.5 2 6763.0 3 4378.0 4 1993.0 5 1521.5 6 1050.0 7 1151.0 8 1252.0 9 1457.0 10 1662.0 11 1897.5 12 2133.0 13 2314.0 14 2495.0 15 2344.0 16 2193.0 17 2286.0 18 2379.0 19 2243.5 20 2108.0 21 2224.5 22 2341.0 23 2589.5 24 2838.0 25 3072.0 26 4157.0 27 5008.0 28 5665.0 29 6322.0 30 6371.0 31 6420.0 32 8426.0 33 10432.0 34 11066.0 35 11700.0 36 13415.5 37 15131.0 38 15230.0 39 15329.0 40 15576.0 41 15823.0 42 17920.5 43 20018.0 44 22202.5 45 24387.0 46 26281.0 47 28175.0 48 29103.5 49 30032.0 50 29660.0 51 29288.0 52 25753.5 53 22219.0 54 19542.5 55 16866.0 56 15523.0 57 14180.0 58 12033.0 59 9886.0 60 9078.5 61 8271.0 62 7612.5 63 6954.0 64 5702.0 65 4450.0 66 3799.0 67 3148.0 68 2540.5 69 1933.0 70 1714.5 71 1496.0 72 1119.0 73 742.0 74 591.0 75 429.5 76 419.0 77 288.5 78 158.0 79 152.0 80 146.0 81 117.0 82 88.0 83 62.5 84 37.0 85 30.5 86 24.0 87 18.5 88 13.0 89 10.5 90 8.0 91 6.5 92 5.0 93 4.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 355956.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.4117669454856 #Duplication Level Percentage of deduplicated Percentage of total 1 75.72482844540919 21.514761777778446 2 9.55927052984586 5.431915329256584 3 3.877637423636824 3.3051159233838794 4 2.0236802568321206 2.2998532731717867 5 1.2907926691475324 1.8336850245380496 6 0.8808584200808273 1.5016046485983072 7 0.6438965040573879 1.2805966187204 8 0.5019193245029376 1.1408331898570423 9 0.4109339489426913 1.0507823628613042 >10 3.98535941723862 24.770795149801334 >50 0.7438804331223106 14.864920109161844 >100 0.35194343072453405 15.38221523832374 >500 0.0 0.0 >1k 0.00399935716732425 2.1918996247189417 >5k 0.0 0.0 >10k+ 9.998392918310626E-4 3.431021729828328 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 12078 3.3931160031015066 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2697 0.757677915247952 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2131 0.5986694984773399 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 1461 0.4104439874591242 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1427 0.40089224510894605 No Hit TAAGTAGGGATTTATATGGATTCCTTTTATTTTTAGTTCAGAAAGAAAGAA 423 0.1188349121801571 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC 374 0.10506916585195922 No Hit AAAAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 362 0.10169796266954344 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5183224892964299 0.0 2 0.0 0.0 0.0 0.665250761330052 0.0 3 0.0 0.0 0.0 0.8298778500713572 0.0 4 0.0 0.0 0.0 1.7100428142804167 0.0 5 0.0 0.0 0.0 1.8496668127521378 0.0 6 0.0 0.0 0.0 2.73179831215094 0.0 7 0.0 0.0 0.0 3.4184000269696253 0.0 8 0.0 0.0 0.0 4.038982346132668 0.0 9 0.0 0.0 0.0 4.942464799020104 0.0 10 0.0 0.0 0.0 6.22717414511906 0.0 11 0.0 0.0 0.0 7.393048579037859 0.0 12 0.0 0.0 0.0 7.971209924822169 0.0 13 0.0 0.0 0.0 8.18331479171583 0.0 14 0.0 0.0 0.0 8.410028205733292 0.0 15 0.0 0.0 0.0 8.61342413107238 0.0 16 0.0 0.0 0.0 9.061513220735147 0.0 17 0.0 0.0 0.0 9.705132094978032 0.0 18 0.0 0.0 0.0 10.488655901291171 0.0 19 0.0 0.0 0.0 10.808077402825068 0.0 20 0.0 0.0 0.0 11.173291080920114 0.0 21 0.0 0.0 0.0 11.524177145489892 0.0 22 0.0 0.0 0.0 11.973951836743867 0.0 23 0.0 0.0 0.0 12.415017586443268 0.0 24 0.0 0.0 0.0 12.739776826349324 0.0 25 0.0 0.0 0.0 13.003573475373361 0.0 26 0.0 0.0 0.0 13.259784917236962 0.0 27 0.0 0.0 0.0 13.548865590129116 0.0 28 0.0 0.0 0.0 13.82446145029161 0.0 29 0.0 0.0 0.0 14.136297744665072 0.0 30 0.0 0.0 0.0 14.512748766701502 0.0 31 0.0 0.0 0.0 14.80800997876142 0.0 32 0.0 0.0 0.0 15.076020631763477 0.0 33 0.0 0.0 0.0 15.362853835867355 0.0 34 0.0 0.0 0.0 15.657834114328738 0.0 35 0.0 0.0 0.0 15.991864162986436 0.0 36 0.0 0.0 0.0 16.280663902280057 0.0 37 0.0 0.0 0.0 16.56468777039859 0.0 38 0.0 0.0 0.0 16.873995662385237 0.0 39 0.0 0.0 0.0 17.188079425546977 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCCGAT 65 0.0 45.000004 10 CGAGGCT 65 0.0 45.000004 4 TCCGGAC 20 7.0267176E-4 45.0 18 TCACGCC 25 3.885363E-5 45.0 43 CTAGACT 20 7.0267176E-4 45.0 41 CTATGCG 25 3.885363E-5 45.0 1 TCGTTGA 25 3.885363E-5 45.0 24 TTGGCGG 20 7.0267176E-4 45.0 2 TCGTTAG 20 7.0267176E-4 45.0 16 GTACCCG 70 0.0 45.0 1 CAAACGA 20 7.0267176E-4 45.0 17 ACGCCTC 25 3.885363E-5 45.0 45 GCGACTC 20 7.0267176E-4 45.0 28 GTCGATG 20 7.0267176E-4 45.0 9 GGTCGAT 20 7.0267176E-4 45.0 8 TGCCACG 25 3.885363E-5 45.0 1 TAGACTT 40 6.7921064E-9 45.0 12 ACGTTAA 25 3.885363E-5 45.0 22 TAGACGG 40 6.7921064E-9 45.0 2 GCAACGC 20 7.0267176E-4 45.0 43 >>END_MODULE