SRR3548599_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548599_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	350573
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11895	3.393016575720321	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2734	0.7798661049196601	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2173	0.6198423723447043	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1382	0.3942117618869679	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	1346	0.383942859261837	No Hit
TAAGTAGGGATTTATATGGATTCCTTTTATTTTTAGTTCAGAAAGAAAGAA	414	0.11809238018900486	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC	352	0.10040704789016838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTC	20	7.0265704E-4	45.000004	28
TTGGCGC	20	7.0265704E-4	45.000004	25
TCGCAGT	20	7.0265704E-4	45.000004	34
TACCCGT	20	7.0265704E-4	45.000004	24
ACGCCTA	20	7.0265704E-4	45.000004	32
CTACTTA	20	7.0265704E-4	45.000004	12
GCGACCG	20	7.0265704E-4	45.000004	32
TTGGACG	20	7.0265704E-4	45.000004	1
CGAAATC	20	7.0265704E-4	45.000004	35
CCGATTA	20	7.0265704E-4	45.000004	12
CCTAGGA	20	7.0265704E-4	45.000004	3
CTATCCT	20	7.0265704E-4	45.000004	19
TAGACGG	20	7.0265704E-4	45.000004	2
ATCAGTT	20	7.0265704E-4	45.000004	23
TAGCGAT	20	7.0265704E-4	45.000004	45
CAACCGT	20	7.0265704E-4	45.000004	44
ATTCGGA	20	7.0265704E-4	45.000004	43
CACGATT	20	7.0265704E-4	45.000004	36
TTGTACG	20	7.0265704E-4	45.000004	1
TTCAACG	20	7.0265704E-4	45.000004	1