##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548599_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 350573 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60938520650478 31.0 31.0 34.0 30.0 34.0 2 31.815419327786223 31.0 31.0 34.0 30.0 34.0 3 31.98903509397472 33.0 31.0 34.0 30.0 34.0 4 35.735510150524995 37.0 35.0 37.0 35.0 37.0 5 35.498526697720585 37.0 35.0 37.0 33.0 37.0 6 32.46154153343241 37.0 35.0 37.0 25.0 37.0 7 34.12582828683327 37.0 35.0 37.0 25.0 37.0 8 35.30854058926386 37.0 35.0 37.0 32.0 37.0 9 37.20441391664504 39.0 37.0 39.0 34.0 39.0 10 36.71260479272505 38.0 37.0 39.0 32.0 39.0 11 36.78033391048369 39.0 37.0 39.0 32.0 39.0 12 36.78290398861293 39.0 37.0 39.0 32.0 39.0 13 36.81105219169759 39.0 37.0 39.0 33.0 39.0 14 37.978095860206004 40.0 37.0 41.0 33.0 41.0 15 37.973731576590325 40.0 37.0 41.0 33.0 41.0 16 37.913008132400385 40.0 37.0 41.0 33.0 41.0 17 37.892002521586086 39.0 37.0 41.0 33.0 41.0 18 37.69513910084348 39.0 37.0 41.0 33.0 41.0 19 37.5930234216554 39.0 36.0 41.0 33.0 41.0 20 37.47837397631877 39.0 36.0 41.0 32.0 41.0 21 37.44163697717737 39.0 36.0 40.0 32.0 41.0 22 37.3649539468242 39.0 35.0 40.0 32.0 41.0 23 37.205409429705085 39.0 35.0 40.0 32.0 41.0 24 37.121803447498806 39.0 35.0 40.0 32.0 41.0 25 37.1592107777838 39.0 35.0 40.0 32.0 41.0 26 37.05284206142515 39.0 35.0 40.0 32.0 41.0 27 36.991337039646524 39.0 35.0 40.0 31.0 41.0 28 36.97463010557002 39.0 35.0 40.0 31.0 41.0 29 36.746166989471526 39.0 35.0 40.0 31.0 41.0 30 36.799565283122206 39.0 35.0 40.0 31.0 41.0 31 36.34676657928591 39.0 35.0 40.0 30.0 41.0 32 36.464696368516684 39.0 35.0 40.0 30.0 41.0 33 36.44623231110211 39.0 35.0 40.0 30.0 41.0 34 36.37278113260291 38.0 35.0 40.0 30.0 41.0 35 36.357862699066956 38.0 35.0 40.0 30.0 41.0 36 36.22961836764383 38.0 35.0 40.0 30.0 41.0 37 36.18278646672733 38.0 35.0 40.0 30.0 41.0 38 36.04913099411535 38.0 35.0 40.0 30.0 41.0 39 35.950070313458255 38.0 35.0 40.0 30.0 41.0 40 35.84407527105624 38.0 35.0 40.0 29.0 41.0 41 35.78668066280061 38.0 35.0 40.0 29.0 41.0 42 35.62422662327104 38.0 35.0 40.0 28.0 41.0 43 35.528982551422956 38.0 35.0 40.0 28.0 41.0 44 35.40374757896358 38.0 34.0 40.0 27.0 41.0 45 35.30853773679091 38.0 34.0 40.0 27.0 41.0 46 35.01856104149493 38.0 34.0 40.0 26.0 41.0 47 35.02673337650076 38.0 34.0 40.0 26.0 41.0 48 34.98758318524244 38.0 34.0 40.0 26.0 41.0 49 34.87942026339735 37.0 34.0 40.0 26.0 41.0 50 34.730698028655944 37.0 33.0 40.0 25.0 41.0 51 33.68772837611567 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 3.0 13 3.0 14 9.0 15 29.0 16 44.0 17 99.0 18 199.0 19 399.0 20 661.0 21 987.0 22 1417.0 23 1786.0 24 2293.0 25 2632.0 26 2951.0 27 3471.0 28 4289.0 29 5493.0 30 7225.0 31 9341.0 32 12592.0 33 16591.0 34 24267.0 35 35922.0 36 37421.0 37 49069.0 38 65954.0 39 65411.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.30068773122859 33.53937696285795 22.199655991762057 24.960279314151403 2 22.72422576752916 34.51378172306481 20.609402321342486 22.15259018806354 3 20.226029956670935 35.34556283570041 19.93365147914985 24.494755728478804 4 19.311812375739144 37.51144554771759 18.602117105424547 24.574624971118713 5 16.678409346983365 40.00992660587096 15.800418172534677 27.511245874610996 6 16.338394571173477 48.31689833501154 16.448785274393636 18.895921819421346 7 81.77669130252472 11.462947802597462 3.7729659728501628 2.987394922027652 8 82.83923747693063 11.302353575432221 2.8133940719907122 3.0450148756464417 9 76.67789590185211 14.747570406163623 5.4661939168161835 3.108339775168082 10 28.758917543564394 48.30292121754955 9.756313235759743 13.181848003126309 11 18.303463187410326 33.724787704700596 31.054302527576283 16.917446580312802 12 22.66974353415694 30.78959303768402 30.73996000832922 15.80070341982982 13 24.29622361105961 32.15820955977785 25.739004429890493 17.80656239927205 14 19.239359562772947 34.066513964281334 27.72917480809988 18.964951664845838 15 18.306600907656893 37.26584762659988 26.580198703265793 17.84735276247743 16 21.340205891497636 34.5425916998742 26.387942026339733 17.729260382288427 17 19.471836108314104 34.82555701665559 26.74221916690675 18.96038770812356 18 19.80842791658228 33.891372125063825 27.42766841713423 18.87253154121966 19 18.940135150168437 38.05455639766896 26.278121817709867 16.72718663445274 20 20.09453095361023 36.37131210903293 24.8421869339624 18.69197000339444 21 20.801088503678265 35.34527758840527 27.112470156001745 16.741163751914723 22 19.045961896666313 33.26981826894826 25.942385751327112 21.741834083058308 23 18.31629931569174 36.14054704726262 25.69222387348712 19.85092976355852 24 16.85497742267659 36.48683726356565 27.66328268292196 18.994902630835803 25 19.357737190257094 36.14168803644319 25.018755009655617 19.481819763644094 26 20.553493851494554 37.56706877027038 23.66240412125292 18.21703325698214 27 17.347599501387727 35.73492539356995 25.586967621579525 21.33050748346279 28 18.038753697518064 36.277465748931036 26.399351918145435 19.284428635405465 29 18.327423960202296 37.69343332201852 24.944875960213707 19.034266757565472 30 21.625167939345015 34.67123822998349 24.939741508901143 18.763852321770358 31 19.32664523508656 37.34885458948636 23.097614476870724 20.226885698556362 32 21.067509477341382 35.36182193152354 24.200665767186862 19.37000282394822 33 19.644695969170474 34.071077921003614 26.446702969139096 19.83752314068682 34 18.652035382074487 36.41010574117231 24.538969059225895 20.398889817527305 35 19.972730358584375 34.72201224851885 25.71704038816452 19.588217004732254 36 20.55092662583827 36.65313643663374 24.606857915469817 18.189079022058174 37 21.262618627218867 36.06638275052557 22.887387220350682 19.78361140190488 38 20.537805250261716 35.35896945857211 25.265779167249047 18.83744612391713 39 20.248564492987196 34.56797870914189 24.54724123078503 20.636215567085888 40 22.316892630065635 34.04854338468735 24.58346763726813 19.05109634797888 41 20.904633271815 32.83196367090449 26.29323992435242 19.970163132928093 42 20.672156726273844 35.253713206664514 24.362400983532673 19.711729083528965 43 18.860836402118817 34.78419615885993 25.931546354111696 20.423421084909563 44 20.90919722853728 33.537950726382235 24.97340068972796 20.579451355352525 45 21.92867106137666 33.84402107407016 25.278900542825607 18.948407321727572 46 19.716007792956102 34.14723894880667 26.648943301395146 19.487809956842085 47 20.108793318367358 34.55571307545076 25.56243635419727 19.773057251984607 48 19.467842646182106 33.61781996902214 26.993522033927313 19.920815350868434 49 20.92403008788469 32.38983036343358 25.89389371115288 20.792245837528846 50 19.98328450850465 31.89264432800016 26.341731964526648 21.782339198968543 51 20.770281795802873 31.206054088592104 27.38858953769971 20.635074577905314 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 13712.0 1 10295.0 2 6878.0 3 4437.5 4 1997.0 5 1520.5 6 1044.0 7 1158.5 8 1273.0 9 1458.5 10 1644.0 11 1877.0 12 2110.0 13 2356.5 14 2603.0 15 2381.0 16 2159.0 17 2254.0 18 2349.0 19 2231.0 20 2113.0 21 2189.5 22 2266.0 23 2600.5 24 2935.0 25 3073.5 26 4118.0 27 5024.0 28 5695.0 29 6366.0 30 6314.0 31 6262.0 32 8269.5 33 10277.0 34 11025.5 35 11774.0 36 13378.0 37 14982.0 38 14976.0 39 14970.0 40 15204.5 41 15439.0 42 17739.0 43 20039.0 44 22032.0 45 24025.0 46 25710.0 47 27395.0 48 28429.5 49 29464.0 50 29001.5 51 28539.0 52 25146.0 53 21753.0 54 19259.0 55 16765.0 56 15241.0 57 13717.0 58 11745.5 59 9774.0 60 8929.0 61 8084.0 62 7461.0 63 6838.0 64 5672.5 65 4507.0 66 3752.0 67 2997.0 68 2446.0 69 1895.0 70 1647.5 71 1400.0 72 1040.5 73 681.0 74 540.0 75 422.0 76 445.0 77 304.0 78 163.0 79 143.0 80 123.0 81 106.5 82 90.0 83 65.5 84 41.0 85 32.5 86 24.0 87 17.0 88 10.0 89 9.0 90 8.0 91 5.5 92 3.0 93 4.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 350573.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.923352146716745 #Duplication Level Percentage of deduplicated Percentage of total 1 75.58150242070796 21.860704102920604 2 9.575433749605821 5.539072845948111 3 3.6725154019055997 3.1866436870066988 4 2.0253907436251923 2.3432435885028773 5 1.4025647523776945 2.0283437120796317 6 0.932710059044166 1.618626089311163 7 0.7247746756662172 1.467403921992149 8 0.5528281309819921 1.2791714167202726 9 0.40887288526216875 1.0643376999313638 >10 4.08173102815634 25.227203380353743 >50 0.7027815118280232 14.274442697612386 >100 0.3338961948087621 14.46383177488787 >500 0.0 0.0 >1k 0.003998756824057031 2.2076116106844625 >5k 0.0 0.0 >10k+ 9.996892060142577E-4 3.4393634720486816 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11895 3.393016575720321 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2734 0.7798661049196601 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2173 0.6198423723447043 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1382 0.3942117618869679 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 1346 0.383942859261837 No Hit TAAGTAGGGATTTATATGGATTCCTTTTATTTTTAGTTCAGAAAGAAAGAA 414 0.11809238018900486 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC 352 0.10040704789016838 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4635268546066012 0.0 2 0.0 0.0 0.0 0.5918881374207369 0.0 3 0.0 0.0 0.0 0.7570463213082582 0.0 4 0.0 0.0 0.0 1.5506042963947595 0.0 5 0.0 0.0 0.0 1.6601392577294887 0.0 6 0.0 0.0 0.0 2.4922056176602307 0.0 7 0.0 0.0 0.0 3.126880849352346 0.0 8 0.0 0.0 0.0 3.7390215447282023 0.0 9 0.0 0.0 0.0 4.640973491968863 0.0 10 0.0 0.0 0.0 5.894350106825112 0.0 11 0.0 0.0 0.0 7.03904750223206 0.0 12 0.0 0.0 0.0 7.624089704569377 0.0 13 0.0 0.0 0.0 7.862271196013384 0.0 14 0.0 0.0 0.0 8.085905075405122 0.0 15 0.0 0.0 0.0 8.296417579220305 0.0 16 0.0 0.0 0.0 8.739977123166929 0.0 17 0.0 0.0 0.0 9.369803150841623 0.0 18 0.0 0.0 0.0 10.107737903375332 0.0 19 0.0 0.0 0.0 10.42065418614668 0.0 20 0.0 0.0 0.0 10.788908444175679 0.0 21 0.0 0.0 0.0 11.147464294169831 0.0 22 0.0 0.0 0.0 11.57904345172047 0.0 23 0.0 0.0 0.0 12.004632416073115 0.0 24 0.0 0.0 0.0 12.303001086792195 0.0 25 0.0 0.0 0.0 12.564287609142747 0.0 26 0.0 0.0 0.0 12.810170777555602 0.0 27 0.0 0.0 0.0 13.090854115975846 0.0 28 0.0 0.0 0.0 13.38522932456293 0.0 29 0.0 0.0 0.0 13.681030769625727 0.0 30 0.0 0.0 0.0 14.058412941099286 0.0 31 0.0 0.0 0.0 14.365909525262927 0.0 32 0.0 0.0 0.0 14.644881379912315 0.0 33 0.0 0.0 0.0 14.958082909978806 0.0 34 0.0 0.0 0.0 15.248464656433896 0.0 35 0.0 0.0 0.0 15.579351518799223 0.0 36 0.0 0.0 0.0 15.876008705747449 0.0 37 0.0 0.0 0.0 16.170383914334533 0.0 38 0.0 0.0 0.0 16.47759525120303 0.0 39 0.0 0.0 0.0 16.78737381372781 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCTC 20 7.0265704E-4 45.000004 28 TTGGCGC 20 7.0265704E-4 45.000004 25 TCGCAGT 20 7.0265704E-4 45.000004 34 TACCCGT 20 7.0265704E-4 45.000004 24 ACGCCTA 20 7.0265704E-4 45.000004 32 CTACTTA 20 7.0265704E-4 45.000004 12 GCGACCG 20 7.0265704E-4 45.000004 32 TTGGACG 20 7.0265704E-4 45.000004 1 CGAAATC 20 7.0265704E-4 45.000004 35 CCGATTA 20 7.0265704E-4 45.000004 12 CCTAGGA 20 7.0265704E-4 45.000004 3 CTATCCT 20 7.0265704E-4 45.000004 19 TAGACGG 20 7.0265704E-4 45.000004 2 ATCAGTT 20 7.0265704E-4 45.000004 23 TAGCGAT 20 7.0265704E-4 45.000004 45 CAACCGT 20 7.0265704E-4 45.000004 44 ATTCGGA 20 7.0265704E-4 45.000004 43 CACGATT 20 7.0265704E-4 45.000004 36 TTGTACG 20 7.0265704E-4 45.000004 1 TTCAACG 20 7.0265704E-4 45.000004 1 >>END_MODULE