SRR3548598_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548598_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	519401
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23469	4.518474165432874	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5862	1.128607761633112	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4573	0.8804372729355546	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2820	0.5429331094857345	No Hit
CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT	2446	0.4709270871638676	RNA PCR Primer, Index 27 (96% over 25bp)
AAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT	906	0.17443170113265088	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTT	889	0.1711587001180206	No Hit
AGACACGGGGATGAGGTATGGGGGACTTTTGGTATAGCATTGAAAATGTAA	851	0.16384258020296455	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	577	0.11108950502598185	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	566	0.10897168084004459	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAGA	35	1.21021E-7	45.000004	32
ACTGCCG	35	1.21021E-7	45.000004	1
CACGGTT	35	1.21021E-7	45.000004	25
GGCAACG	35	1.21021E-7	45.000004	1
CGCGCCT	35	1.21021E-7	45.000004	17
TAGCCGT	35	1.21021E-7	45.000004	44
TACGCAG	70	0.0	45.000004	1
CGTAGTG	35	1.21021E-7	45.000004	28
CGAGGAC	35	1.21021E-7	45.000004	3
TTGCGCG	35	1.21021E-7	45.000004	14
ACGTACG	35	1.21021E-7	45.000004	1
GCCCGCC	35	1.21021E-7	45.000004	3
TCACGAG	55	1.8189894E-12	45.0	1
TCGCCTG	25	3.8878432E-5	45.0	43
CTTCGTT	20	7.029711E-4	45.0	35
CTAGATT	25	3.8878432E-5	45.0	39
CGGGTAT	40	6.8030204E-9	45.0	6
GACAGGT	25	3.8878432E-5	45.0	39
CAGCGCG	45	3.8380676E-10	45.0	1
AGCCGAG	25	3.8878432E-5	45.0	1