SRR3548593_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548593_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	797883
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19849	2.48770809755315	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4559	0.5713870329359066	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3601	0.4513193037074358	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2116	0.26520179023741575	No Hit
CTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGCT	1893	0.23725283030218716	Illumina PCR Primer Index 11 (95% over 23bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1022	0.12808895539822254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAT	55	1.8189894E-12	45.000004	23
ATTCGCG	55	1.8189894E-12	45.000004	1
CATTCTA	125	0.0	45.000004	45
TGGGCGA	70	0.0	45.000004	6
TGCGTGA	35	1.2113014E-7	45.000004	31
CGGACAA	25	3.889729E-5	45.0	19
ACAACGT	25	3.889729E-5	45.0	12
TCGCATA	25	3.889729E-5	45.0	28
CTCGTAA	25	3.889729E-5	45.0	29
GCGAAAT	20	7.0319884E-4	45.0	23
GTTTACG	20	7.0319884E-4	45.0	1
TAGGTCC	20	7.0319884E-4	45.0	44
CGTTGCA	40	6.8102963E-9	45.0	39
CGCATAT	25	3.889729E-5	45.0	29
CGTTGAT	105	0.0	45.0	25
TTCACGG	45	3.8380676E-10	45.0	2
ACCGAAA	20	7.0319884E-4	45.0	10
TCGATCC	20	7.0319884E-4	45.0	30
ATACTCG	25	3.889729E-5	45.0	44
CGTTAGA	20	7.0319884E-4	45.0	9