SRR3548591_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548591_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	957553
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19664	2.053567792069995	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5483	0.5726053805898994	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3443	0.3595623427632726	No Hit
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	2472	0.25815803407226545	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2300	0.24019558186335377	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1233	0.12876571845109355	No Hit
TAGTATGGGGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAAC	1169	0.12208201530359156	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	25	3.8903156E-5	45.000004	19
GTCGCTA	25	3.8903156E-5	45.000004	21
GGTACCG	25	3.8903156E-5	45.000004	20
ACACGAC	60	0.0	45.000004	26
GATCGGT	25	3.8903156E-5	45.000004	24
GACCGTA	30	2.1651213E-6	45.000004	16
ATTACCG	30	2.1651213E-6	45.000004	15
GCGCCTA	25	3.8903156E-5	45.000004	9
TTCGTAC	50	2.1827873E-11	45.000004	33
CGACACC	30	2.1651213E-6	45.000004	33
TCGGCCC	30	2.1651213E-6	45.000004	35
TAACACG	30	2.1651213E-6	45.000004	34
GTCCGAT	25	3.8903156E-5	45.000004	12
TCGTATA	25	3.8903156E-5	45.000004	30
TCGTACA	50	2.1827873E-11	45.000004	34
CGTCGTT	30	2.1651213E-6	45.000004	30
TTACGGC	30	2.1651213E-6	45.000004	22
GCGGATA	30	2.1651213E-6	45.000004	13
TAGGCCG	30	2.1651213E-6	45.000004	23
CACGTTA	30	2.1651213E-6	45.000004	5