##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548591_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 957553 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.654524605948705 31.0 31.0 34.0 30.0 34.0 2 31.853805481263176 33.0 31.0 34.0 30.0 34.0 3 32.028330546716475 33.0 31.0 34.0 30.0 34.0 4 35.755068387859474 37.0 35.0 37.0 35.0 37.0 5 35.51539183731867 37.0 35.0 37.0 33.0 37.0 6 32.61337074814658 37.0 35.0 37.0 26.0 37.0 7 34.18209435926784 37.0 35.0 37.0 26.0 37.0 8 35.32570938632117 37.0 35.0 37.0 32.0 37.0 9 37.19652593642336 39.0 37.0 39.0 34.0 39.0 10 36.715253359344075 39.0 37.0 39.0 32.0 39.0 11 36.761882632084074 39.0 37.0 39.0 32.0 39.0 12 36.71407535666433 39.0 35.0 39.0 32.0 39.0 13 36.68038635981507 39.0 35.0 39.0 32.0 39.0 14 37.8418259876999 40.0 37.0 41.0 33.0 41.0 15 37.89192765309074 40.0 37.0 41.0 33.0 41.0 16 37.86884381334506 40.0 37.0 41.0 33.0 41.0 17 37.807631535800105 39.0 37.0 41.0 33.0 41.0 18 37.677511323133025 39.0 36.0 41.0 33.0 41.0 19 37.642535713427876 39.0 36.0 41.0 33.0 41.0 20 37.504501578502705 39.0 36.0 41.0 32.0 41.0 21 37.44011349763407 39.0 36.0 41.0 32.0 41.0 22 37.40740094804152 39.0 36.0 41.0 32.0 41.0 23 37.23488203786109 39.0 35.0 41.0 32.0 41.0 24 37.095934115396226 39.0 35.0 41.0 31.0 41.0 25 37.1167110332274 39.0 35.0 41.0 31.0 41.0 26 37.02557665215398 39.0 35.0 41.0 31.0 41.0 27 36.948017498770305 39.0 35.0 40.0 31.0 41.0 28 36.91170514843565 39.0 35.0 40.0 31.0 41.0 29 36.717924751945844 39.0 35.0 40.0 31.0 41.0 30 36.77069363262399 39.0 35.0 40.0 31.0 41.0 31 36.3558957049897 39.0 35.0 40.0 30.0 41.0 32 36.466003448373094 39.0 35.0 40.0 30.0 41.0 33 36.44838144729326 39.0 35.0 40.0 30.0 41.0 34 36.392777214420505 39.0 35.0 40.0 30.0 41.0 35 36.28466518302381 39.0 35.0 40.0 30.0 41.0 36 36.203193974641614 38.0 35.0 40.0 30.0 41.0 37 36.12179273627674 38.0 35.0 40.0 30.0 41.0 38 36.04285298046165 38.0 35.0 40.0 30.0 41.0 39 35.972853721934975 38.0 35.0 40.0 29.0 41.0 40 35.86160870468789 38.0 35.0 40.0 29.0 41.0 41 35.81298058697534 38.0 35.0 40.0 29.0 41.0 42 35.70030483952324 38.0 35.0 40.0 28.0 41.0 43 35.61107322518962 38.0 35.0 40.0 28.0 41.0 44 35.45789214800643 38.0 34.0 40.0 27.0 41.0 45 35.25010834909399 38.0 34.0 40.0 27.0 41.0 46 35.0020949232053 38.0 34.0 40.0 26.0 41.0 47 34.96440197043923 37.0 34.0 40.0 26.0 41.0 48 34.96343178915423 37.0 34.0 40.0 26.0 41.0 49 34.80930246158698 37.0 34.0 40.0 26.0 41.0 50 34.704103062702536 37.0 33.0 40.0 26.0 41.0 51 33.59191292805725 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 11.0 10 20.0 11 19.0 12 27.0 13 31.0 14 67.0 15 93.0 16 162.0 17 347.0 18 687.0 19 1193.0 20 1860.0 21 2886.0 22 3838.0 23 4979.0 24 6076.0 25 7180.0 26 8398.0 27 10199.0 28 12496.0 29 15931.0 30 20193.0 31 25717.0 32 34060.0 33 46191.0 34 67068.0 35 89387.0 36 98316.0 37 133272.0 38 180189.0 39 186621.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.689403093092498 31.854842499579654 20.30874531226992 27.14700909505792 2 23.89215009508612 31.73192502138263 19.813837980769733 24.562086902761518 3 21.139926458378806 32.83640696650734 20.158466424312806 25.865200150801055 4 20.34258155945415 34.94845716111797 19.11288461317546 25.596076666252415 5 18.321492387366547 37.171206189109114 16.33121090947446 28.17609051404987 6 17.08291864784508 45.3292924778054 16.29904558807711 21.288743286272403 7 82.72053870647369 9.192911515080628 4.4049781056505495 3.681571672795135 8 84.17915248555433 8.898933009452218 3.9015072794926233 3.020407225500834 9 77.36229743941067 12.699662577423911 6.227853706270045 3.7101862768953784 10 34.80402651341492 37.121705012672926 12.538835970437145 15.535432503475002 11 23.916691817580855 31.726181213990245 26.023624801969188 18.333502166459713 12 25.088010794180583 27.624789437242637 28.17045113951917 19.116748629057607 13 23.479013694281154 28.908060441563027 26.61701232203335 20.995913542122473 14 20.468840889224932 30.541077099648795 27.651210951247606 21.33887105987867 15 19.189016169339972 34.16479296707337 26.141425069943907 20.504765793642754 16 22.376724839251718 30.45993276612365 26.499629785505345 20.663712609119287 17 19.93299587594629 31.46802317991798 27.78300522268741 20.815975721448314 18 21.203212772556714 31.892647195507717 26.310710738726733 20.593429293208835 19 21.846414767642106 32.33053418453078 25.08550440550027 20.737546642326848 20 23.38251773008909 31.800224112921168 25.538116428020174 19.27914172896957 21 22.294953908556497 31.405676761495187 26.83245731567861 19.466912014269706 22 22.515933843870783 27.93620823077156 26.602496154259867 22.94536177109779 23 20.55384923863222 32.18840105978468 25.40861967953732 21.849130022045777 24 19.147765188976486 31.678873127649332 27.953648518672075 21.21971316470211 25 20.980039747147156 32.547336805377874 24.21286341330454 22.25976003417043 26 22.854191882851392 31.48880531939224 23.949797034733326 21.707205763023037 27 20.039621827721284 31.65631562952651 26.513728221832107 21.790334320920095 28 19.852478139591227 31.24808757322049 26.92905771273235 21.97037657445593 29 20.23908859352955 32.27100745337334 25.79449910344388 21.69540484965323 30 22.08661034950546 30.027580718769613 25.971826102576046 21.913982829148882 31 22.315527182307402 31.82664562692613 23.505226342562764 22.352600848203704 32 20.876233482637517 30.231538097630107 26.00305152821828 22.889176891514097 33 21.044370389941864 30.01452661105965 25.939243049731974 23.001859949266514 34 19.80684097903719 30.06204356312392 27.7789323410819 22.352183116756983 35 21.05168069025944 29.450484725127485 27.72159870001974 21.776235884593333 36 21.570816445669326 32.23842440052926 25.109315097963247 21.081444055838165 37 21.5297743310292 31.432933738393594 24.996423174487468 22.04086875608974 38 19.598392987124473 30.614075669962915 27.023987183999214 22.763544158913398 39 20.746423435569625 29.372577810314414 27.197763465834267 22.683235288281693 40 21.182848364529168 29.863098961624058 27.41279072803281 21.541261945813968 41 20.785690191561198 28.001061037874663 28.13776365381342 23.07548511675072 42 21.690600938015965 29.047373879043768 26.22601568790448 23.036009495035785 43 20.12650996863881 30.24051932373456 27.51597039537237 22.117000312254255 44 22.156162635384153 27.71752581841423 26.672988335893677 23.453323210307943 45 22.09371178409968 29.805347589115172 27.09259957412279 21.00834105266236 46 20.75958197614127 29.18198783774893 28.230186736399972 21.828243449709834 47 20.823181588904216 31.186054453382738 26.11865870609773 21.872105251615316 48 20.076904359340944 29.71710182099581 27.865402750552708 22.340591069110534 49 19.6847589637336 29.301772330095567 27.578107948071807 23.43536075809903 50 20.13037398452096 28.646978287363726 28.300156753725382 22.922490974389927 51 20.26383918174764 28.16230537630815 27.199747690206184 24.374107751738023 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 23060.0 1 18000.5 2 12941.0 3 8012.0 4 3083.0 5 2577.5 6 2072.0 7 2186.5 8 2301.0 9 2378.0 10 2455.0 11 3086.0 12 3717.0 13 3552.5 14 3388.0 15 3183.0 16 2978.0 17 3283.0 18 3588.0 19 3697.5 20 3807.0 21 4543.0 22 5279.0 23 5090.5 24 4902.0 25 7353.5 26 11199.5 27 12594.0 28 14337.0 29 16080.0 30 18458.5 31 20837.0 32 23269.5 33 25702.0 34 28841.5 35 31981.0 36 33305.5 37 34630.0 38 38140.0 39 41650.0 40 42330.0 41 43010.0 42 47347.5 43 51685.0 44 53273.0 45 54861.0 46 60397.0 47 65933.0 48 68748.0 49 71563.0 50 69878.0 51 68193.0 52 62812.0 53 57431.0 54 54103.0 55 50775.0 56 47437.0 57 44099.0 58 41549.0 59 38999.0 60 35238.5 61 31478.0 62 30018.5 63 28559.0 64 25245.5 65 21932.0 66 19552.0 67 17172.0 68 15714.0 69 14256.0 70 11975.0 71 9694.0 72 8846.0 73 7998.0 74 6598.5 75 4562.0 76 3925.0 77 3018.5 78 2112.0 79 1456.0 80 800.0 81 646.0 82 492.0 83 382.5 84 273.0 85 215.0 86 157.0 87 96.5 88 36.0 89 32.5 90 29.0 91 24.0 92 19.0 93 15.5 94 12.0 95 9.5 96 7.0 97 3.5 98 0.0 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 957553.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.94121046934962 #Duplication Level Percentage of deduplicated Percentage of total 1 76.33447994274096 15.985364105492852 2 9.541519770282516 3.996219474138931 3 3.638955319431663 2.2861238769833347 4 1.9176503908759122 1.6063168176785219 5 1.1805069435799738 1.2360622183018433 6 0.8013947152768195 1.0069305240981832 7 0.6275288013838318 0.919884889375026 8 0.46657632026462736 0.7816538338140987 9 0.36325768249743456 0.6846350025408262 >10 3.120523502524741 13.991712018423302 >50 0.9413343167887966 14.397671200547357 >100 1.0551442153794592 38.40297005227632 >500 0.007587326572719026 0.9161470701317839 >1k 0.0025291088575730087 1.1246078672203894 >5k 5.058217715146017E-4 0.5807878813195249 >10k+ 5.058217715146017E-4 2.082913167657694 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 19664 2.053567792069995 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5483 0.5726053805898994 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3443 0.3595623427632726 No Hit CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT 2472 0.25815803407226545 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2300 0.24019558186335377 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1233 0.12876571845109355 No Hit TAGTATGGGGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAAC 1169 0.12208201530359156 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0886572335943808E-4 0.0 0.0 0.30807694195517116 0.0 2 2.0886572335943808E-4 0.0 0.0 0.39966456164828473 0.0 3 2.0886572335943808E-4 0.0 0.0 0.5153761723894135 0.0 4 2.0886572335943808E-4 0.0 0.0 1.0229198801528478 0.0 5 2.0886572335943808E-4 0.0 0.0 1.102393287891114 0.0 6 2.0886572335943808E-4 0.0 0.0 1.6424156156369412 0.0 7 2.0886572335943808E-4 0.0 0.0 2.090432592242936 0.0 8 2.0886572335943808E-4 0.0 0.0 2.447801844910934 0.0 9 2.0886572335943808E-4 0.0 0.0 2.9604627628966753 0.0 10 2.0886572335943808E-4 0.0 0.0 3.7820360857310247 0.0 11 2.0886572335943808E-4 0.0 0.0 4.490404186504559 0.0 12 2.0886572335943808E-4 0.0 0.0 4.848191170619277 0.0 13 2.0886572335943808E-4 0.0 0.0 4.9812386363992385 0.0 14 2.0886572335943808E-4 0.0 0.0 5.132352987249792 0.0 15 2.0886572335943808E-4 0.0 0.0 5.260700974254167 0.0 16 2.0886572335943808E-4 0.0 0.0 5.543818462267885 0.0 17 2.0886572335943808E-4 0.0 0.0 5.937008186492027 0.0 18 2.0886572335943808E-4 0.0 0.0 6.417608215942094 0.0 19 2.0886572335943808E-4 0.0 0.0 6.625220744961376 0.0 20 2.0886572335943808E-4 0.0 0.0 6.849124800402693 0.0 21 2.0886572335943808E-4 0.0 0.0 7.087753889340851 0.0 22 2.0886572335943808E-4 0.0 0.0 7.372020138833046 0.0 23 2.0886572335943808E-4 0.0 0.0 7.674144407672474 0.0 24 2.0886572335943808E-4 0.0 0.0 7.893140118614844 0.0 25 2.0886572335943808E-4 0.0 0.0 8.082059165393456 0.0 26 2.0886572335943808E-4 0.0 0.0 8.253329058548195 0.0 27 2.0886572335943808E-4 0.0 0.0 8.442352538188487 0.0 28 2.0886572335943808E-4 0.0 0.0 8.63419570509413 0.0 29 2.0886572335943808E-4 0.0 0.0 8.85037172877115 0.0 30 2.0886572335943808E-4 0.0 0.0 9.109991822906931 0.0 31 2.0886572335943808E-4 0.0 0.0 9.305907871418084 0.0 32 2.0886572335943808E-4 0.0 0.0 9.516862252011116 0.0 33 3.132985850391571E-4 0.0 0.0 9.729696424114383 0.0 34 3.132985850391571E-4 0.0 0.0 9.956629032544413 0.0 35 3.132985850391571E-4 0.0 0.0 10.18753008971827 0.0 36 3.132985850391571E-4 0.0 0.0 10.398693336034663 0.0 37 3.132985850391571E-4 0.0 0.0 10.60473937212875 0.0 38 3.132985850391571E-4 0.0 0.0 10.828121263261668 0.0 39 3.132985850391571E-4 0.0 0.0 11.074373951102446 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 25 3.8903156E-5 45.000004 19 GTCGCTA 25 3.8903156E-5 45.000004 21 GGTACCG 25 3.8903156E-5 45.000004 20 ACACGAC 60 0.0 45.000004 26 GATCGGT 25 3.8903156E-5 45.000004 24 GACCGTA 30 2.1651213E-6 45.000004 16 ATTACCG 30 2.1651213E-6 45.000004 15 GCGCCTA 25 3.8903156E-5 45.000004 9 TTCGTAC 50 2.1827873E-11 45.000004 33 CGACACC 30 2.1651213E-6 45.000004 33 TCGGCCC 30 2.1651213E-6 45.000004 35 TAACACG 30 2.1651213E-6 45.000004 34 GTCCGAT 25 3.8903156E-5 45.000004 12 TCGTATA 25 3.8903156E-5 45.000004 30 TCGTACA 50 2.1827873E-11 45.000004 34 CGTCGTT 30 2.1651213E-6 45.000004 30 TTACGGC 30 2.1651213E-6 45.000004 22 GCGGATA 30 2.1651213E-6 45.000004 13 TAGGCCG 30 2.1651213E-6 45.000004 23 CACGTTA 30 2.1651213E-6 45.000004 5 >>END_MODULE