SRR3548586_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548586_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1129174
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16049	1.4213044225247835	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3286	0.291009180161782	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2627	0.23264793557060295	No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	2146	0.19005042624077423	TruSeq Adapter, Index 13 (95% over 22bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2138	0.18934194375711805	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1726	0.152855095848824	No Hit
ATAAGCAAACCAATTTGAAATAAAATATGAACATGTGCCATTGTATTATAA	1228	0.1087520612412259	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTTCG	35	1.2119017E-7	45.000004	13
CGTATAG	50	2.1827873E-11	45.000004	1
CGTCTAA	35	1.2119017E-7	45.000004	35
CCTCGCG	25	3.8907616E-5	45.000004	1
TATCTCG	25	3.8907616E-5	45.000004	1
CGTAGGA	25	3.8907616E-5	45.000004	26
CTCGCAC	25	3.8907616E-5	45.000004	38
TATAACG	25	3.8907616E-5	45.000004	1
TATCGGA	25	3.8907616E-5	45.000004	14
TCGCGAC	35	1.2119017E-7	45.000004	36
ATTTCGA	35	1.2119017E-7	45.000004	14
CCGATTA	20	7.0332346E-4	45.0	19
CGCGATT	20	7.0332346E-4	45.0	29
ATCCGTA	20	7.0332346E-4	45.0	11
GTAATCG	45	3.8562575E-10	45.0	30
CTAACGG	135	0.0	45.0	2
GCATTAG	40	6.8157533E-9	45.0	1
CCGTAAC	20	7.0332346E-4	45.0	13
TACCTCG	20	7.0332346E-4	45.0	29
CGAATGT	20	7.0332346E-4	45.0	40