SRR3548585_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548585_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1115696
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15703	1.4074622477807575	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3124	0.2800045890636876	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2484	0.222641292968694	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2131	0.19100184996629904	No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	1960	0.17567509429091796	TruSeq Adapter, Index 13 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1760	0.15774906426123245	No Hit
ATAAGCAAACCAATTTGAAATAAAATATGAACATGTGCCATTGTATTATAA	1295	0.11607104444221365	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACA	20	7.033197E-4	45.000004	23
TCCGCAA	20	7.033197E-4	45.000004	19
GATCGAC	20	7.033197E-4	45.000004	36
ACGTTGT	20	7.033197E-4	45.000004	40
CCGATAT	40	6.8139343E-9	45.000004	21
CCTAGCG	40	6.8139343E-9	45.000004	1
TAAACCG	40	6.8139343E-9	45.000004	1
ATCACGC	20	7.033197E-4	45.000004	42
AACGGCC	20	7.033197E-4	45.000004	33
TAACACG	55	1.8189894E-12	45.000004	1
CGAATTG	20	7.033197E-4	45.000004	2
CGTCGGA	20	7.033197E-4	45.000004	14
TTCGGAT	40	6.8139343E-9	45.000004	17
TAGGCGT	20	7.033197E-4	45.000004	33
ATACGTT	20	7.033197E-4	45.000004	17
CACGTAT	20	7.033197E-4	45.000004	45
ATCGGCG	20	7.033197E-4	45.000004	38
CCTATCG	20	7.033197E-4	45.000004	12
GATTCGC	40	6.8139343E-9	45.000004	23
TATACGA	40	6.8139343E-9	45.000004	23