SRR3548584_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548584_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468001
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11775	2.516020264913964	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2882	0.6158106499772437	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2320	0.49572543648411005	No Hit
CTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGCT	1343	0.28696519879231025	RNA PCR Primer, Index 36 (96% over 26bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1089	0.23269181048758444	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGT	756	0.16153811637154622	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCC	745	0.1591876940433888	No Hit
AATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCT	608	0.12991425231997367	RNA PCR Primer, Index 15 (95% over 23bp)
GCGGCAGGGATCTTTTTTTGTCATTTCTGATTCCACTGTTTTATTCTTATG	495	0.10576900476708383	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGGG	115	0.0	45.000004	3
TCACGGA	55	1.8189894E-12	45.0	21
GCGAGAA	20	7.0289965E-4	45.0	24
TTCTACG	20	7.0289965E-4	45.0	1
CGGAACG	20	7.0289965E-4	45.0	27
TCGCATA	20	7.0289965E-4	45.0	37
TCGTTGA	45	3.8380676E-10	45.0	24
TCTGAAC	35	1.2098644E-7	45.0	13
CGAACTC	20	7.0289965E-4	45.0	41
GCCCAAA	20	7.0289965E-4	45.0	39
GCGACGT	25	3.8872487E-5	45.0	11
TCCGCGG	20	7.0289965E-4	45.0	2
TCCGCAC	25	3.8872487E-5	45.0	43
GATCGAG	55	1.8189894E-12	45.0	19
GATCGAC	20	7.0289965E-4	45.0	9
CTCCGCA	25	3.8872487E-5	45.0	14
ACGTTGG	20	7.0289965E-4	45.0	2
CTATCGT	20	7.0289965E-4	45.0	18
GACACGC	20	7.0289965E-4	45.0	45
GACGTGA	25	3.8872487E-5	45.0	13