SRR3548582_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548582_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	728579
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13604	1.867196282077853	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2858	0.39227043326804645	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2558	0.35109439058770564	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1549	0.2126056337061595	No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	1031	0.14150833334477111	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	745	0.10225383932284625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCA	20	7.0315856E-4	45.0	35
GAAATCG	20	7.0315856E-4	45.0	9
AATCCGA	20	7.0315856E-4	45.0	24
TACCCGA	25	3.889394E-5	45.0	15
GTCGATA	25	3.889394E-5	45.0	11
GTACATC	20	7.0315856E-4	45.0	14
GGTCGAT	25	3.889394E-5	45.0	10
ACGTTTA	25	3.889394E-5	45.0	39
CGACGAA	25	3.889394E-5	45.0	21
TATGGTC	25	3.889394E-5	45.0	35
CTATACG	20	7.0315856E-4	45.0	1
ATTACGT	35	1.2111013E-7	45.0	20
CCAATTA	25	3.889394E-5	45.0	43
TGTATCG	20	7.0315856E-4	45.0	27
CACGATT	25	3.889394E-5	45.0	36
TAACGTG	20	7.0315856E-4	45.0	16
TCGATTG	25	3.889394E-5	45.0	12
TAACGCA	25	3.889394E-5	45.0	35
TCGATAC	25	3.889394E-5	45.0	12
ATCGTTC	20	7.0315856E-4	45.0	22