SRR3548581_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548581_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722630
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13235	1.8315043659964299	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2854	0.3949462380471334	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2614	0.3617342208322378	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1503	0.20799025780828362	No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	1058	0.14640964255566472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	20	7.031546E-4	45.0	30
GAAATCG	40	6.8084773E-9	45.0	9
GTCGCAC	25	3.8893628E-5	45.0	35
GTCGATA	35	1.2110831E-7	45.0	11
CAACGTA	20	7.031546E-4	45.0	40
GGTCGAT	35	1.2110831E-7	45.0	10
GGTCGAA	25	3.8893628E-5	45.0	12
CGAAACA	45	3.8380676E-10	45.0	43
CATGCGA	20	7.031546E-4	45.0	16
CTATCGC	25	3.8893628E-5	45.0	30
TGGACGA	20	7.031546E-4	45.0	25
CGCATTC	20	7.031546E-4	45.0	11
CGATTAC	40	6.8084773E-9	45.0	38
TCGATTG	20	7.031546E-4	45.0	12
CGCTGGT	25	3.8893628E-5	45.0	27
CGTTCGC	35	1.2110831E-7	45.0	18
CCGCTAT	50	2.1827873E-11	45.0	25
TCGATAC	35	1.2110831E-7	45.0	12
ATCGTAA	25	3.8893628E-5	45.0	32
ATCCGGT	45	3.8380676E-10	45.0	18