SRR3548580_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548580_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302465
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10428	3.4476716314284297	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2533	0.83745226720447	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1905	0.6298249384226273	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1245	0.41161787314234705	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	1124	0.37161324450762895	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	1082	0.35772734035342935	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGT	1024	0.33855156795001073	No Hit
AATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT	981	0.3243350470302349	No Hit
GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTC	414	0.13687534094853948	No Hit
AGAGAAGGGACTGGAGCTAAGTCACTCCGACTTGGGTTGGCTTGCTTTTGA	340	0.11240970029590201	No Hit
TAACGTGGGAGGGTTTGTGTTGGGGGTTTTGTTGTTTTGGATTTTTGTTTT	328	0.10844229910898781	No Hit
GCTACAGGGGTGTTCTTTTTTAACTTTTGATTTTTTTTCCTTAATCTACTT	324	0.10711983204668307	No Hit
AGACCAGGGAGGATTAGGAAGCCATTTTCGGTCTTTTTACCTTTTTTTTTT	323	0.10678921528110691	No Hit
AATGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	320	0.10579736498437836	No Hit
TCATGAGGGACTTTTCAAATATATTCTCCTCAGACCCCCTATCCACACCAT	316	0.10447489792207362	No Hit
AGTGAAGGGAAAGTGAGAGGAAGAGCAGGTCTGGGAGAAAGAGCCAAGATG	315	0.10414428115649743	No Hit
AGGGGAGGGGAGGGGTGGTGATTTTTGTTTTCAAAAAGACTCAATTTTGTA	313	0.10348304762534508	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	308	0.10182996379746417	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGA	20	7.025035E-4	45.000004	24
TCCGGAT	20	7.025035E-4	45.000004	9
CTTAAGT	35	1.2079545E-7	45.000004	22
GTTGACG	20	7.025035E-4	45.000004	16
GTGCACC	20	7.025035E-4	45.000004	25
TCCATTA	40	6.7866495E-9	45.000004	23
GGTACCA	20	7.025035E-4	45.000004	38
GGTAATT	40	6.7866495E-9	45.000004	8
ATTAGAC	40	6.7866495E-9	45.000004	24
GGTAACC	35	1.2079545E-7	45.000004	6
AGTCAAA	20	7.025035E-4	45.000004	14
ATAGGCG	20	7.025035E-4	45.000004	26
AGATACG	20	7.025035E-4	45.000004	1
ACCATAC	20	7.025035E-4	45.000004	41
GAGTCGA	35	1.2079545E-7	45.000004	29
TCACACG	20	7.025035E-4	45.000004	1
CGCATGT	20	7.025035E-4	45.000004	12
GAGTAGC	40	6.7866495E-9	45.000004	9
GCACGAC	20	7.025035E-4	45.000004	36
GTGATCG	20	7.025035E-4	45.000004	23