##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548580_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 302465 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.65483940290612 31.0 31.0 34.0 30.0 34.0 2 31.826965103400394 31.0 31.0 34.0 30.0 34.0 3 31.99978840527003 33.0 31.0 34.0 30.0 34.0 4 35.720701568776555 37.0 35.0 37.0 33.0 37.0 5 35.47546658291042 37.0 35.0 37.0 33.0 37.0 6 34.152986295935065 37.0 35.0 37.0 32.0 37.0 7 34.847400525680655 37.0 35.0 37.0 32.0 37.0 8 35.502835038764815 37.0 35.0 37.0 32.0 37.0 9 37.09938009356455 39.0 37.0 39.0 34.0 39.0 10 36.61909642437968 38.0 35.0 39.0 32.0 39.0 11 36.66606384209743 39.0 35.0 39.0 32.0 39.0 12 36.628743821599194 39.0 35.0 39.0 32.0 39.0 13 36.59221066900302 39.0 35.0 39.0 32.0 39.0 14 37.690870018018614 39.0 37.0 41.0 33.0 41.0 15 37.75114145438315 39.0 37.0 41.0 33.0 41.0 16 37.6237283652654 39.0 36.0 41.0 32.0 41.0 17 37.55758186897658 39.0 36.0 41.0 32.0 41.0 18 37.28205908121601 39.0 36.0 40.0 32.0 41.0 19 37.217119336121534 39.0 35.0 40.0 32.0 41.0 20 37.134894946522735 39.0 35.0 40.0 32.0 41.0 21 37.07472269518787 39.0 35.0 40.0 31.0 41.0 22 36.96404542674359 39.0 35.0 40.0 31.0 41.0 23 36.849020547831984 39.0 35.0 40.0 31.0 41.0 24 36.684518869951894 39.0 35.0 40.0 31.0 41.0 25 36.61768469079067 38.0 35.0 40.0 31.0 41.0 26 36.643750516588696 39.0 35.0 40.0 31.0 41.0 27 36.573494453903756 39.0 35.0 40.0 31.0 41.0 28 36.26473476269982 38.0 35.0 40.0 30.0 41.0 29 35.91704825351694 38.0 35.0 40.0 29.0 41.0 30 35.91873770518903 38.0 35.0 40.0 29.0 41.0 31 35.7874068073992 38.0 35.0 40.0 28.0 41.0 32 35.75718843502554 38.0 35.0 40.0 28.0 41.0 33 35.67722215793563 38.0 35.0 40.0 28.0 41.0 34 35.628796720281684 38.0 35.0 40.0 28.0 41.0 35 35.43392128014812 38.0 34.0 40.0 27.0 41.0 36 35.34719389020217 38.0 34.0 40.0 27.0 41.0 37 35.342423090274906 38.0 34.0 40.0 27.0 41.0 38 35.18478501644818 38.0 34.0 40.0 26.0 41.0 39 35.03271783512142 38.0 34.0 40.0 26.0 41.0 40 34.83898302282909 37.0 33.0 40.0 25.0 41.0 41 34.7170813151935 37.0 33.0 40.0 24.0 41.0 42 34.61327756930554 37.0 33.0 40.0 24.0 41.0 43 34.44451093514952 37.0 33.0 40.0 23.0 41.0 44 34.39123865571223 37.0 33.0 40.0 23.0 41.0 45 34.22836691848644 37.0 33.0 40.0 23.0 41.0 46 33.979895194485316 36.0 33.0 40.0 23.0 41.0 47 33.94583505529565 36.0 33.0 40.0 23.0 41.0 48 33.814107417387135 36.0 33.0 40.0 23.0 41.0 49 33.47381349908254 36.0 32.0 39.0 21.0 41.0 50 33.299052782966626 35.0 32.0 39.0 20.0 41.0 51 32.0751690278214 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 9.0 11 5.0 12 9.0 13 7.0 14 16.0 15 31.0 16 64.0 17 113.0 18 219.0 19 461.0 20 911.0 21 1309.0 22 1845.0 23 2364.0 24 2709.0 25 3099.0 26 3584.0 27 4282.0 28 4954.0 29 6222.0 30 7619.0 31 9609.0 32 11950.0 33 15942.0 34 22963.0 35 31714.0 36 29801.0 37 38639.0 38 52069.0 39 49940.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.859603590498075 34.606648703155734 19.862463425520307 24.67128428082588 2 20.886714165275322 35.24606152778008 18.167060651645645 25.700163655298958 3 19.905774221810788 33.73844907675268 20.41128725637677 25.94448944505976 4 19.665415833236903 34.77625510389632 18.042087514257847 27.516241548608928 5 16.523895326732017 38.657365314995126 15.050005785793397 29.768733572479462 6 16.40421205759344 44.51886995189526 17.98918883176566 21.087729158745642 7 78.96021027226291 12.718165738184585 4.707321508273685 3.6143024812788256 8 79.89420263501562 11.226753508670424 4.0755128692576 4.803530987056353 9 74.12626254277355 14.18544294381168 6.970062651877076 4.718231861537698 10 33.415105880019176 37.488635048683314 12.766105169193128 16.330153902104374 11 22.976873357247946 36.24849156100706 22.20323012579968 18.57140495594532 12 24.866017555750254 27.114211561668295 29.877506488354022 18.142264394227432 13 26.69631196998 28.628105731241632 24.887507645512706 19.788074653265667 14 17.865538161440167 34.270080835799185 26.961466615972096 20.902914386788556 15 17.312416312631214 32.604764187591954 29.459276279900156 20.62354321987668 16 18.494701866331642 33.78175987304316 25.497164961235185 22.226373299390012 17 19.800638090357563 29.090638586282708 25.55469227844544 25.55403104491429 18 23.11242623113418 30.442530540723723 26.061527780073728 20.38351544806837 19 22.197609640784886 33.239548377498224 23.465524936769544 21.09731704494735 20 22.23529995206057 30.29474484651117 24.224951647298035 23.245003554130232 21 23.93169457623196 31.702841651100126 24.262311341808143 20.10315243085977 22 20.055874233382376 33.974840064139656 22.16421734746169 23.80506835501628 23 20.16398591572579 31.494883705552706 23.41494057163639 24.926189807085116 24 17.564346288000266 33.49544575405419 24.93181029209991 24.008397665845635 25 18.99723935000744 33.640586514142136 24.134693270295738 23.227480865554693 26 20.479394310085464 30.854148413866067 23.566693667035857 25.099763609012616 27 17.938273849866924 31.963698279139734 24.109897012877525 25.988130858115817 28 21.746317755773394 30.417073049774352 26.777643694311738 21.058965500140513 29 21.494387780404345 32.825285570231266 23.635131337510128 22.045195311854265 30 21.26791529598466 32.013952027507315 24.161803845072985 22.556328831435042 31 21.73110938455689 35.642471029705916 21.414378523134907 21.212041062602285 32 23.451969649380917 31.672755525432695 22.901162117931 21.974112707255387 33 20.366653993023988 31.064751293538095 26.13856148645298 22.430033226984943 34 21.633577438711917 31.013175078108212 24.780057196700444 22.573190286479427 35 21.821367761559188 31.68069032780652 24.62202238275503 21.875919527879258 36 22.42474335873572 33.070603210288795 25.017109417618567 19.487544013356917 37 23.67216041525466 32.14983551815912 22.607905046864925 21.57009901972129 38 22.633362537814293 30.65181095333344 25.690906385862828 21.023920122989438 39 26.261881540012894 28.38906980973005 23.88177144462996 21.4672772056271 40 24.15519150976146 30.120179194286944 24.580034053526852 21.144595242424742 41 21.14856264361166 29.289008645628417 26.03111103764072 23.531317673119204 42 22.981501991966013 29.850726530342353 24.90436910055709 22.263402377134543 43 20.41393219050138 31.476369166680442 25.18671581835915 22.92298282445903 44 21.70069264212388 27.722215793562892 24.297356718959218 26.279734845354007 45 22.606251963037046 29.759476303043325 25.359297769989915 22.27497396392971 46 20.496586381895426 31.311722017423506 27.456069297274066 20.735622303407006 47 21.61770783396426 28.867472269518785 26.90493114905857 22.609888747458385 48 20.927380027441192 28.661828641330402 27.677913146975687 22.732878184252723 49 23.413287487808507 29.032780652306876 26.460912832889754 21.09301902699486 50 20.86158729109153 27.81677218851768 27.481857404989007 23.839783115401783 51 22.077265138115155 27.44515894401005 27.129419932884797 23.348155984989997 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 12045.0 1 9055.5 2 6066.0 3 3737.0 4 1408.0 5 1084.0 6 760.0 7 772.5 8 785.0 9 849.5 10 914.0 11 973.0 12 1032.0 13 1082.5 14 1133.0 15 1128.5 16 1124.0 17 1206.0 18 1288.0 19 1167.0 20 1046.0 21 1148.5 22 1251.0 23 1426.5 24 1602.0 25 1782.5 26 2151.5 27 2340.0 28 2883.0 29 3426.0 30 4025.0 31 4624.0 32 4731.5 33 4839.0 34 5586.0 35 6333.0 36 8421.5 37 10510.0 38 10521.0 39 10532.0 40 10679.5 41 10827.0 42 11576.5 43 12326.0 44 14979.0 45 17632.0 46 19468.0 47 21304.0 48 21935.5 49 22567.0 50 23073.5 51 23580.0 52 22137.0 53 20694.0 54 18738.0 55 16782.0 56 15528.5 57 14275.0 58 13810.0 59 13345.0 60 13280.0 61 13215.0 62 11769.5 63 10324.0 64 9353.5 65 8383.0 66 7136.5 67 5890.0 68 5431.0 69 4972.0 70 4600.0 71 4228.0 72 3568.0 73 2908.0 74 2253.5 75 1420.0 76 1241.0 77 944.0 78 647.0 79 478.0 80 309.0 81 213.5 82 118.0 83 111.0 84 104.0 85 90.0 86 76.0 87 69.0 88 62.0 89 38.0 90 14.0 91 10.0 92 6.0 93 8.0 94 10.0 95 7.0 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 302465.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.79242226373299 #Duplication Level Percentage of deduplicated Percentage of total 1 81.31179165661925 23.411634403980624 2 7.86454924385959 4.528788454862545 3 2.6525198938992043 2.291174185442944 4 1.3446323791151378 1.5486089299588381 5 0.8784319129146715 1.2646091283288976 6 0.5913626603281776 1.0216058056304034 7 0.431752155890087 0.870183326996512 8 0.33529688702102495 0.772320764385962 9 0.2583623273278446 0.6694989502917693 >10 2.993558165971959 20.037029077744535 >50 0.9071388381733209 18.77539550030582 >100 0.4214176627969732 18.09035756203197 >500 0.0011482770103459759 0.3243350470302349 >1k 0.006889662062075854 2.9467872315805135 >5k 0.0 0.0 >10k+ 0.0011482770103459759 3.4476716314284297 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10428 3.4476716314284297 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2533 0.83745226720447 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1905 0.6298249384226273 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1245 0.41161787314234705 No Hit CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT 1124 0.37161324450762895 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC 1082 0.35772734035342935 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGT 1024 0.33855156795001073 No Hit AATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT 981 0.3243350470302349 No Hit GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTC 414 0.13687534094853948 No Hit AGAGAAGGGACTGGAGCTAAGTCACTCCGACTTGGGTTGGCTTGCTTTTGA 340 0.11240970029590201 No Hit TAACGTGGGAGGGTTTGTGTTGGGGGTTTTGTTGTTTTGGATTTTTGTTTT 328 0.10844229910898781 No Hit GCTACAGGGGTGTTCTTTTTTAACTTTTGATTTTTTTTCCTTAATCTACTT 324 0.10711983204668307 No Hit AGACCAGGGAGGATTAGGAAGCCATTTTCGGTCTTTTTACCTTTTTTTTTT 323 0.10678921528110691 No Hit AATGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC 320 0.10579736498437836 No Hit TCATGAGGGACTTTTCAAATATATTCTCCTCAGACCCCCTATCCACACCAT 316 0.10447489792207362 No Hit AGTGAAGGGAAAGTGAGAGGAAGAGCAGGTCTGGGAGAAAGAGCCAAGATG 315 0.10414428115649743 No Hit AGGGGAGGGGAGGGGTGGTGATTTTTGTTTTCAAAAAGACTCAATTTTGTA 313 0.10348304762534508 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 308 0.10182996379746417 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.612335311523647E-4 0.0 0.0 0.4612103879787744 0.0 2 6.612335311523647E-4 0.0 0.0 0.6076736151290232 0.0 3 6.612335311523647E-4 0.0 0.0 0.8252194468781512 0.0 4 6.612335311523647E-4 0.0 0.0 1.8117798753574794 0.0 5 6.612335311523647E-4 0.0 0.0 2.052138263931364 0.0 6 6.612335311523647E-4 0.0 0.0 2.7870993338072174 0.0 7 6.612335311523647E-4 0.0 0.0 3.34286611674078 0.0 8 6.612335311523647E-4 0.0 0.0 3.8655712231167243 0.0 9 6.612335311523647E-4 0.0 0.0 4.836592663613972 0.0 10 6.612335311523647E-4 0.0 0.0 6.021192534673434 0.0 11 6.612335311523647E-4 0.0 0.0 7.197857603359067 0.0 12 6.612335311523647E-4 0.0 0.0 7.725521961218654 0.0 13 6.612335311523647E-4 0.0 0.0 8.120278379316614 0.0 14 6.612335311523647E-4 0.0 0.0 8.448580827533764 0.0 15 6.612335311523647E-4 0.0 0.0 8.684971814920734 0.0 16 6.612335311523647E-4 0.0 0.0 9.140231101119138 0.0 17 6.612335311523647E-4 0.0 0.0 9.643099201560512 0.0 18 6.612335311523647E-4 0.0 0.0 10.685203246656638 0.0 19 6.612335311523647E-4 0.0 0.0 10.912336964607475 0.0 20 6.612335311523647E-4 0.0 0.0 11.343791843684393 0.0 21 6.612335311523647E-4 0.0 0.0 11.610268956738796 0.0 22 6.612335311523647E-4 0.0 0.0 11.882366554807994 0.0 23 6.612335311523647E-4 0.0 0.0 12.182235961185592 0.0 24 6.612335311523647E-4 0.0 0.0 12.380606020531301 0.0 25 6.612335311523647E-4 0.0 0.0 12.547567487147273 0.0 26 6.612335311523647E-4 0.0 0.0 12.710230935810754 0.0 27 6.612335311523647E-4 0.0 0.0 12.959515977055197 0.0 28 6.612335311523647E-4 0.0 0.0 13.174086257914139 0.0 29 6.612335311523647E-4 0.0 0.0 13.35328054485643 0.0 30 6.612335311523647E-4 0.0 0.0 13.655133651827484 0.0 31 6.612335311523647E-4 0.0 0.0 13.836972872894384 0.0 32 6.612335311523647E-4 0.0 0.0 14.015505926305522 0.0 33 6.612335311523647E-4 0.0 0.0 14.221149554493909 0.0 34 6.612335311523647E-4 0.0 0.0 14.465475344254708 0.0 35 6.612335311523647E-4 0.0 0.0 14.683682409534988 0.0 36 6.612335311523647E-4 0.0 0.0 14.859570528821516 0.0 37 6.612335311523647E-4 0.0 0.0 15.032152480452284 0.0 38 6.612335311523647E-4 0.0 0.0 15.237134875109517 0.0 39 6.612335311523647E-4 0.0 0.0 15.461293042170169 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGA 20 7.025035E-4 45.000004 24 TCCGGAT 20 7.025035E-4 45.000004 9 CTTAAGT 35 1.2079545E-7 45.000004 22 GTTGACG 20 7.025035E-4 45.000004 16 GTGCACC 20 7.025035E-4 45.000004 25 TCCATTA 40 6.7866495E-9 45.000004 23 GGTACCA 20 7.025035E-4 45.000004 38 GGTAATT 40 6.7866495E-9 45.000004 8 ATTAGAC 40 6.7866495E-9 45.000004 24 GGTAACC 35 1.2079545E-7 45.000004 6 AGTCAAA 20 7.025035E-4 45.000004 14 ATAGGCG 20 7.025035E-4 45.000004 26 AGATACG 20 7.025035E-4 45.000004 1 ACCATAC 20 7.025035E-4 45.000004 41 GAGTCGA 35 1.2079545E-7 45.000004 29 TCACACG 20 7.025035E-4 45.000004 1 CGCATGT 20 7.025035E-4 45.000004 12 GAGTAGC 40 6.7866495E-9 45.000004 9 GCACGAC 20 7.025035E-4 45.000004 36 GTGATCG 20 7.025035E-4 45.000004 23 >>END_MODULE