SRR3548579_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548579_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	298611
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10121	3.38935940069187	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2427	0.8127630931211509	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1826	0.6114979019527077	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1258	0.42128387768702424	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	1078	0.36100478549015275	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGT	1017	0.3405768709123241	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	981	0.32852105247294977	No Hit
AATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT	863	0.2890047586994451	No Hit
GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTC	428	0.14333028589033894	No Hit
AGAGAAGGGACTGGAGCTAAGTCACTCCGACTTGGGTTGGCTTGCTTTTGA	349	0.11687446209282311	No Hit
AGTGAAGGGAAAGTGAGAGGAAGAGCAGGTCTGGGAGAAAGAGCCAAGATG	315	0.10548841134452515	No Hit
AGACCAGGGAGGATTAGGAAGCCATTTTCGGTCTTTTTACCTTTTTTTTTT	305	0.1021395728891434	No Hit
TCATGAGGGACTTTTCAAATATATTCTCCTCAGACCCCCTATCCACACCAT	304	0.10180468904360522	No Hit
GCTACAGGGGTGTTCTTTTTTAACTTTTGATTTTTTTTCCTTAATCTACTT	301	0.1008000375069907	No Hit
AGGGGAGGGGAGGGGTGGTGATTTTTGTTTTCAAAAAGACTCAATTTTGTA	300	0.10046515366145252	No Hit
TAACGTGGGAGGGTTTGTGTTGGGGGTTTTGTTGTTTTGGATTTTTGTTTT	299	0.10013026981591434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCATA	20	7.024891E-4	45.0	10
GTCATCG	20	7.024891E-4	45.0	37
CGGGTGT	45	3.8198777E-10	45.0	6
ACTATTA	20	7.024891E-4	45.0	20
AACCGCT	20	7.024891E-4	45.0	18
TCGTTGA	25	3.8838487E-5	45.0	24
CTGTCGA	40	6.7866495E-9	45.0	12
TTGGCGA	25	3.8838487E-5	45.0	25
GTCGCAT	25	3.8838487E-5	45.0	43
CAAACGT	35	1.2078999E-7	45.0	17
GCCCACG	20	7.024891E-4	45.0	1
TGCCCGA	20	7.024891E-4	45.0	16
GATAATC	35	1.2078999E-7	45.0	9
ATGATGG	25	3.8838487E-5	45.0	32
AGTTTCG	20	7.024891E-4	45.0	10
ATAGGTT	20	7.024891E-4	45.0	5
CGAGTTC	20	7.024891E-4	45.0	40
GTACAGA	20	7.024891E-4	45.0	29
ACGTTTT	25	3.8838487E-5	45.0	13
CATGCGG	45	3.8198777E-10	45.0	2