##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548579_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 298611 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.63663763223726 31.0 31.0 34.0 30.0 34.0 2 31.821255747444 31.0 31.0 34.0 30.0 34.0 3 31.99649711497567 33.0 31.0 34.0 30.0 34.0 4 35.723071152770665 37.0 35.0 37.0 35.0 37.0 5 35.49478418410574 37.0 35.0 37.0 33.0 37.0 6 32.82134951492075 37.0 35.0 37.0 27.0 37.0 7 34.21265124191674 37.0 35.0 37.0 28.0 37.0 8 35.23686669278761 37.0 35.0 37.0 32.0 37.0 9 37.00515051354438 39.0 37.0 39.0 33.0 39.0 10 36.56940970024547 38.0 35.0 39.0 32.0 39.0 11 36.674904809266906 39.0 35.0 39.0 32.0 39.0 12 36.64351614642461 39.0 35.0 39.0 32.0 39.0 13 36.63014758331073 39.0 35.0 39.0 32.0 39.0 14 37.701407516802796 39.0 37.0 41.0 33.0 41.0 15 37.81644011774516 40.0 37.0 41.0 33.0 41.0 16 37.69748937581 39.0 36.0 41.0 33.0 41.0 17 37.657865919205925 39.0 36.0 41.0 33.0 41.0 18 37.39881986932832 39.0 36.0 40.0 32.0 41.0 19 37.32726858689064 39.0 35.0 40.0 32.0 41.0 20 37.24130055490253 39.0 35.0 40.0 32.0 41.0 21 37.16132024607265 39.0 35.0 40.0 32.0 41.0 22 37.01325805144486 39.0 35.0 40.0 31.0 41.0 23 36.91296703738308 39.0 35.0 40.0 31.0 41.0 24 36.82287323641795 39.0 35.0 40.0 31.0 41.0 25 36.706534588477986 39.0 35.0 40.0 31.0 41.0 26 36.739942600908876 39.0 35.0 40.0 31.0 41.0 27 36.644078751285114 39.0 35.0 40.0 31.0 41.0 28 36.37126227767899 38.0 35.0 40.0 30.0 41.0 29 35.98962194962677 38.0 35.0 40.0 29.0 41.0 30 36.02621470742873 38.0 35.0 40.0 30.0 41.0 31 35.56221304640486 38.0 34.0 40.0 27.0 41.0 32 35.73870687951884 38.0 35.0 40.0 28.0 41.0 33 35.68187709093101 38.0 35.0 40.0 28.0 41.0 34 35.65134238189484 38.0 35.0 40.0 28.0 41.0 35 35.56456727983899 38.0 34.0 40.0 28.0 41.0 36 35.45372407580431 38.0 34.0 40.0 27.0 41.0 37 35.411404804243645 38.0 34.0 40.0 27.0 41.0 38 35.2597894920147 38.0 34.0 40.0 26.0 41.0 39 35.104540690061654 38.0 34.0 40.0 26.0 41.0 40 34.93922193087327 38.0 34.0 40.0 25.0 41.0 41 34.87352106921714 37.0 33.0 40.0 25.0 41.0 42 34.75346855943016 37.0 33.0 40.0 24.0 41.0 43 34.62170181272626 37.0 33.0 40.0 24.0 41.0 44 34.51228521387357 37.0 33.0 40.0 24.0 41.0 45 34.347485524645776 37.0 33.0 40.0 23.0 41.0 46 33.99940390675494 36.0 33.0 40.0 23.0 41.0 47 34.028451731516924 36.0 33.0 40.0 23.0 41.0 48 34.02859908040896 36.0 33.0 40.0 23.0 41.0 49 33.742430787881226 36.0 33.0 40.0 22.0 41.0 50 33.53697285096664 36.0 33.0 40.0 21.0 41.0 51 32.359899668799876 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 6.0 11 6.0 12 8.0 13 10.0 14 18.0 15 29.0 16 61.0 17 105.0 18 192.0 19 443.0 20 770.0 21 1259.0 22 1701.0 23 2243.0 24 2630.0 25 3001.0 26 3470.0 27 4011.0 28 4717.0 29 5965.0 30 7546.0 31 9487.0 32 12081.0 33 15909.0 34 22749.0 35 31437.0 36 30026.0 37 39539.0 38 50738.0 39 48443.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.984826412958665 34.108254551908665 20.06624002464745 24.840679010485214 2 20.96037989223438 35.048943274025405 18.17615560042999 25.814521233310227 3 20.124509813771095 33.68194741653857 20.361272692566583 25.83227007712375 4 19.69351430456346 34.68626406930756 18.04588578451564 27.574335841613333 5 16.694294583923565 38.7025260288469 14.900321823375561 29.70285756385398 6 15.787764014051724 46.7029010987539 17.276322707468914 20.233012179725463 7 79.3560853417992 12.512934888533911 4.583890077726541 3.5470896919403505 8 79.99805767369588 11.131204141843401 3.9938247418882757 4.876913442572444 9 74.40114396321636 13.97202380354374 6.9639095679663505 4.66292266527355 10 33.51885898376148 37.47919534109594 12.69511170050668 16.306833974635897 11 23.04871555301044 36.05995760370516 22.138836144683218 18.75249069860119 12 24.949516260285122 26.986614692693838 29.751080837611475 18.312788209409568 13 26.638670377179675 28.537126897535593 24.97898603869248 19.845216686592256 14 18.099802083647287 33.98803125136047 26.87978674596716 21.032379919025086 15 17.261252934419698 32.48172371412976 29.635880794746345 20.621142556704207 16 18.619541811922534 33.61430087973986 25.525181590765243 22.240975717572358 17 19.72733757296282 29.12685734952832 25.676883972794034 25.46892110471483 18 23.135115585159287 30.35420664342573 26.109888785074897 20.40078898634009 19 22.258724561385883 33.17794722900362 23.601273898148428 20.96205431146207 20 22.377608326551936 30.003248373301723 24.340027661405642 23.279115638740702 21 24.016194982770227 31.58390012424191 24.251618326183564 20.148286566804305 22 20.138574935283696 33.878524233869484 22.221552454531146 23.761348376315674 23 20.209905194383328 31.611025715730502 23.467320359933158 24.711748729953015 24 17.490983252458886 33.43111941623048 24.919711598032222 24.158185733278412 25 18.985904738941297 33.63104507201677 24.23956250774419 23.143487681297742 26 20.498575069237233 30.833760310236396 23.50181339602359 25.165851224502784 27 18.04253694606026 32.01188167883969 23.992418229737016 25.95316314536303 28 21.669328993238697 30.45333226170503 26.87442860443855 21.002910140617725 29 21.554128950373563 32.58118421625459 23.61701343888872 22.247673394483122 30 21.27349628781257 31.945239793577596 24.483357947295982 22.29790597131385 31 21.830408122942558 35.398227124921725 21.41180331601984 21.359561436115886 32 23.3966598685246 31.626430372625254 23.142483029761127 21.834426729089014 33 20.201198214399334 31.103676689740162 26.23044696946864 22.46467812639186 34 21.74735692924909 31.130467397383217 24.774372009068653 22.347803664299036 35 21.773142985355527 31.72254203629471 24.58248356557528 21.921831412774477 36 22.60231538690805 32.88190990954787 25.148437264534795 19.36733743900928 37 23.922762389865078 32.087230544085784 22.551747926231787 21.438259139817355 38 22.44056648951311 30.830411471781012 25.643730472085757 21.085291566620118 39 26.253219070965233 28.314429140252706 23.868846090733427 21.563505698048633 40 24.185981092458082 30.15528563917605 24.498762604190734 21.15997066417513 41 21.043765969773386 29.2986527622894 26.01813061139744 23.63945065653978 42 22.922464343242545 29.850876223581853 24.88521856194179 22.34144087123381 43 20.274537776572195 31.605332690356352 25.227804735927347 22.892324797144113 44 21.659282477872548 27.80875453349006 24.317925327600122 26.21403766103727 45 22.634799119925255 29.833127379768325 25.342000127255858 22.190073373050556 46 20.74136585725241 31.34244887160888 27.275284567547747 20.640900703590958 47 21.561831278820943 28.808382812421513 26.86907046290994 22.760715445847605 48 20.88101242084183 28.82378746931627 27.506689304814625 22.788510805027276 49 23.377236605483386 29.08566663652712 26.54423313273791 20.99286362525158 50 20.965068266071913 27.78497778045685 27.66374982837203 23.586204125099208 51 22.133143119309068 27.46717301104112 27.102149619404507 23.297534250245302 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 11743.0 1 8847.0 2 5951.0 3 3668.0 4 1385.0 5 1076.5 6 768.0 7 769.0 8 770.0 9 812.5 10 855.0 11 915.0 12 975.0 13 1071.0 14 1167.0 15 1181.0 16 1195.0 17 1202.5 18 1210.0 19 1107.0 20 1004.0 21 1086.5 22 1169.0 23 1350.5 24 1532.0 25 1757.5 26 2073.5 27 2164.0 28 2761.5 29 3359.0 30 4018.5 31 4678.0 32 4728.5 33 4779.0 34 5591.5 35 6404.0 36 8436.0 37 10468.0 38 10395.0 39 10322.0 40 10592.5 41 10863.0 42 11548.0 43 12233.0 44 14842.0 45 17451.0 46 19284.5 47 21118.0 48 21678.0 49 22238.0 50 22773.5 51 23309.0 52 21824.5 53 20340.0 54 18444.5 55 16549.0 56 15399.0 57 14249.0 58 13718.0 59 13187.0 60 13115.0 61 13043.0 62 11528.0 63 10013.0 64 9246.0 65 8479.0 66 7171.5 67 5864.0 68 5391.0 69 4918.0 70 4511.5 71 4105.0 72 3426.0 73 2747.0 74 2128.0 75 1361.0 76 1213.0 77 936.5 78 660.0 79 478.5 80 297.0 81 211.5 82 126.0 83 105.0 84 84.0 85 85.0 86 86.0 87 56.5 88 27.0 89 18.0 90 9.0 91 7.0 92 5.0 93 6.0 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 298611.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.236699250864838 #Duplication Level Percentage of deduplicated Percentage of total 1 81.11770365618986 23.71613905716802 2 7.706405204801612 4.506197025561684 3 2.7009071749289837 2.3689683233370507 4 1.4123064235315679 1.6516471261942796 5 0.9277925410061394 1.356279574429609 6 0.6082195546595803 1.0669399318846258 7 0.4535874644918904 0.9282980198318214 8 0.37226243929258684 0.8706979983992552 9 0.31842756345642814 0.8378793815365141 >10 3.0892055346834053 20.597700687516536 >50 0.8980115458627326 18.86434190301094 >100 0.3860075139741593 16.68089923010204 >500 0.002290845780262073 0.6175258111723949 >1k 0.005727114450655182 2.5471265291633594 >5k 0.0 0.0 >10k+ 0.0011454228901310365 3.38935940069187 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10121 3.38935940069187 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2427 0.8127630931211509 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1826 0.6114979019527077 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1258 0.42128387768702424 No Hit CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT 1078 0.36100478549015275 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGT 1017 0.3405768709123241 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC 981 0.32852105247294977 No Hit AATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT 863 0.2890047586994451 No Hit GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTC 428 0.14333028589033894 No Hit AGAGAAGGGACTGGAGCTAAGTCACTCCGACTTGGGTTGGCTTGCTTTTGA 349 0.11687446209282311 No Hit AGTGAAGGGAAAGTGAGAGGAAGAGCAGGTCTGGGAGAAAGAGCCAAGATG 315 0.10548841134452515 No Hit AGACCAGGGAGGATTAGGAAGCCATTTTCGGTCTTTTTACCTTTTTTTTTT 305 0.1021395728891434 No Hit TCATGAGGGACTTTTCAAATATATTCTCCTCAGACCCCCTATCCACACCAT 304 0.10180468904360522 No Hit GCTACAGGGGTGTTCTTTTTTAACTTTTGATTTTTTTTCCTTAATCTACTT 301 0.1008000375069907 No Hit AGGGGAGGGGAGGGGTGGTGATTTTTGTTTTCAAAAAGACTCAATTTTGTA 300 0.10046515366145252 No Hit TAACGTGGGAGGGTTTGTGTTGGGGGTTTTGTTGTTTTGGATTTTTGTTTT 299 0.10013026981591434 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4286513222888641 0.0 2 0.0 0.0 0.0 0.564279279731825 0.0 3 0.0 0.0 0.0 0.757507258607352 0.0 4 0.0 0.0 0.0 1.6767634146096426 0.0 5 0.0 0.0 0.0 1.882382095770082 0.0 6 0.0 0.0 0.0 2.5635358375947304 0.0 7 0.0 0.0 0.0 3.110066273513032 0.0 8 0.0 0.0 0.0 3.6505688002116465 0.0 9 0.0 0.0 0.0 4.635462189939419 0.0 10 0.0 0.0 0.0 5.825639376982093 0.0 11 0.0 0.0 0.0 6.9384583957054495 0.0 12 0.0 0.0 0.0 7.50541674620158 0.0 13 0.0 0.0 0.0 7.908282012384005 0.0 14 0.0 0.0 0.0 8.237137948702493 0.0 15 0.0 0.0 0.0 8.466868266741681 0.0 16 0.0 0.0 0.0 8.906235872087766 0.0 17 0.0 0.0 0.0 9.376747675068902 0.0 18 0.0 0.0 0.0 10.439334116961533 0.0 19 0.0 0.0 0.0 10.648301636577353 0.0 20 0.0 0.0 0.0 11.062218069662537 0.0 21 0.0 0.0 0.0 11.318404211499242 0.0 22 0.0 0.0 0.0 11.584971752547629 0.0 23 0.0 0.0 0.0 11.861250925116623 0.0 24 0.0 0.0 0.0 12.049455646309077 0.0 25 0.0 0.0 0.0 12.222590594452313 0.0 26 0.0 0.0 0.0 12.380990653391871 0.0 27 0.0 0.0 0.0 12.646888426749182 0.0 28 0.0 0.0 0.0 12.827390819494259 0.0 29 0.0 0.0 0.0 13.003874606092877 0.0 30 0.0 0.0 0.0 13.296563087093242 0.0 31 0.0 0.0 0.0 13.482423621366928 0.0 32 0.0 0.0 0.0 13.68234927715322 0.0 33 0.0 0.0 0.0 13.898014473679805 0.0 34 0.0 0.0 0.0 14.12473083710915 0.0 35 0.0 0.0 0.0 14.35010766515634 0.0 36 0.0 0.0 0.0 14.536303083275566 0.0 37 0.0 0.0 0.0 14.718145011402795 0.0 38 0.0 0.0 0.0 14.899317171838948 0.0 39 0.0 0.0 0.0 15.124024232195064 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCATA 20 7.024891E-4 45.0 10 GTCATCG 20 7.024891E-4 45.0 37 CGGGTGT 45 3.8198777E-10 45.0 6 ACTATTA 20 7.024891E-4 45.0 20 AACCGCT 20 7.024891E-4 45.0 18 TCGTTGA 25 3.8838487E-5 45.0 24 CTGTCGA 40 6.7866495E-9 45.0 12 TTGGCGA 25 3.8838487E-5 45.0 25 GTCGCAT 25 3.8838487E-5 45.0 43 CAAACGT 35 1.2078999E-7 45.0 17 GCCCACG 20 7.024891E-4 45.0 1 TGCCCGA 20 7.024891E-4 45.0 16 GATAATC 35 1.2078999E-7 45.0 9 ATGATGG 25 3.8838487E-5 45.0 32 AGTTTCG 20 7.024891E-4 45.0 10 ATAGGTT 20 7.024891E-4 45.0 5 CGAGTTC 20 7.024891E-4 45.0 40 GTACAGA 20 7.024891E-4 45.0 29 ACGTTTT 25 3.8838487E-5 45.0 13 CATGCGG 45 3.8198777E-10 45.0 2 >>END_MODULE