SRR3548574_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548574_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	645947
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15387	2.382083979026143	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3557	0.5506643733928636	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3196	0.4947774353004194	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2314	0.3582337250579382	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1607	0.2487820208159493	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGT	1582	0.2449117342444504	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCT	1287	0.19924235270076338	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCC	1171	0.18128422300900848	No Hit
GAACTGGGGTGATGACTGTAGCAAGAAGCCCTTGTTTCTCGGTGTAAATGG	883	0.13669852170534116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAT	25	3.8889008E-5	45.000004	14
GGTACGC	20	7.0309883E-4	45.000004	37
CGAGTTC	20	7.0309883E-4	45.000004	40
CGTATAG	20	7.0309883E-4	45.000004	1
CGTATAA	40	6.8066583E-9	45.000004	34
GATCGCA	20	7.0309883E-4	45.000004	40
TTTACGA	45	3.8380676E-10	45.000004	32
CACGGAT	40	6.8066583E-9	45.000004	33
AGATACG	20	7.0309883E-4	45.000004	1
GAATGCG	25	3.8889008E-5	45.000004	1
CGAAACA	20	7.0309883E-4	45.000004	18
ACGTTGT	20	7.0309883E-4	45.000004	14
GCGAATC	25	3.8889008E-5	45.000004	40
CGACGCG	20	7.0309883E-4	45.000004	1
CCTAGCG	40	6.8066583E-9	45.000004	1
TAGACCG	20	7.0309883E-4	45.000004	26
TTTCGGC	20	7.0309883E-4	45.000004	32
TAGCGTT	20	7.0309883E-4	45.000004	15
TAGGTAC	25	3.8889008E-5	45.000004	22
ATTACGG	40	6.8066583E-9	45.000004	2