SRR3548573_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548573_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	639503
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15473	2.419535170280671	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3559	0.5565259271653143	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3031	0.47396181096883044	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2265	0.3541812939110528	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1509	0.23596449117517823	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGT	1415	0.22126557654928905	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCT	1192	0.18639474717084986	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCC	1034	0.16168806088478083	No Hit
GAACTGGGGTGATGACTGTAGCAAGAAGCCCTTGTTTCTCGGTGTAAATGG	833	0.13025740301452846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGCG	65	0.0	45.000004	1
CCTAGCG	65	0.0	45.000004	1
ACGTCAT	65	0.0	45.000004	37
TCATAGA	65	0.0	45.000004	15
TCGGTGT	115	0.0	45.000004	39
ACGCGAG	35	1.2107921E-7	45.0	1
ACAACGA	90	0.0	45.0	13
AACCGAT	20	7.0309377E-4	45.0	32
TCACCGA	25	3.8888575E-5	45.0	44
CTCCGTA	25	3.8888575E-5	45.0	43
CGTATAA	45	3.8380676E-10	45.0	34
AGATACG	25	3.8888575E-5	45.0	1
CACGGAT	50	2.1827873E-11	45.0	33
CGACGAG	50	2.1827873E-11	45.0	1
TTAGCGA	20	7.0309377E-4	45.0	30
CTATCCG	45	3.8380676E-10	45.0	1
TAGACCG	35	1.2107921E-7	45.0	26
ACGCAAC	25	3.8888575E-5	45.0	26
CCGGCAT	25	3.8888575E-5	45.0	19
GGCGTTG	20	7.0309377E-4	45.0	1