SRR3548572_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548572_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	748184
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13493	1.803433380024165	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2913	0.38934272852667257	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2437	0.32572201490542435	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1442	0.19273333832319323	No Hit
CTGTCTCTTATACACATCTGACGCTCAGGATCTCGTATGCCGTCTTCTGCT	1354	0.18097152572094566	TruSeq Adapter, Index 1 (96% over 27bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	800	0.10692556911134159	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGA	35	1.2111741E-7	45.000004	37
AATCCCG	35	1.2111741E-7	45.000004	1
CGTATAA	30	2.164481E-6	45.000004	21
TTAGACG	30	2.164481E-6	45.000004	45
ATTACGT	35	1.2111741E-7	45.000004	36
TTGTCGT	30	2.164481E-6	45.000004	39
TAAGTCG	30	2.164481E-6	45.000004	1
CGATTCG	35	1.2111741E-7	45.000004	40
TCAATCG	35	1.2111741E-7	45.000004	40
CGCTAAC	35	1.2111741E-7	45.000004	35
TCGTCGT	35	1.2111741E-7	45.000004	39
CGAGCAT	35	1.2111741E-7	45.000004	42
TTACGTG	35	1.2111741E-7	45.000004	37
CGGCTAT	35	1.2111741E-7	45.000004	42
ATAGTCG	30	2.164481E-6	45.000004	1
ATACGTA	30	2.164481E-6	45.000004	18
CGATATT	30	2.164481E-6	45.000004	31
GTACGAG	35	1.2111741E-7	45.000004	40
TACCGAA	30	2.164481E-6	45.000004	24
CAGGTAC	20	7.0317055E-4	45.0	21