SRR3548571_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548571_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	743245
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13549	1.8229520548405975	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2849	0.38331909397305064	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2555	0.3437628238333255	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1492	0.2007413437022785	No Hit
CTGTCTCTTATACACATCTGACGCTCAGGATCTCGTATGCCGTCTTCTGCT	1296	0.17437049694246176	TruSeq Adapter, Index 1 (96% over 27bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	832	0.11194155359269152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAT	25	3.889471E-5	45.0	27
TCGTTCG	20	7.031676E-4	45.0	16
AATCCCG	35	1.2111559E-7	45.0	1
GTACCGC	25	3.889471E-5	45.0	26
CAAACGT	45	3.8380676E-10	45.0	22
CGAACAT	20	7.031676E-4	45.0	13
ATCTACG	20	7.031676E-4	45.0	1
CGAGTAC	25	3.889471E-5	45.0	10
GCGAATT	20	7.031676E-4	45.0	22
ACGTTGC	25	3.889471E-5	45.0	23
TTATGGC	20	7.031676E-4	45.0	20
CGCATAG	40	6.8102963E-9	45.0	1
GACCGAA	20	7.031676E-4	45.0	9
TAAGTCG	20	7.031676E-4	45.0	1
TAACGCA	20	7.031676E-4	45.0	29
GAGCGTA	25	3.889471E-5	45.0	19
CTACGAA	20	7.031676E-4	45.0	10
CGCTAAC	20	7.031676E-4	45.0	35
ACTACGT	25	3.889471E-5	45.0	22
TTGCGTA	35	1.2111559E-7	45.0	25