SRR3548569_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548569_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468257
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15104	3.2255791157419966	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3436	0.7337850795610102	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2701	0.5768199941485125	No Hit
CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT	2202	0.47025458241948326	Illumina PCR Primer Index 11 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1188	0.2537068319320373	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGT	960	0.20501562176326246	No Hit
AACCCTGGGAACTTACATTGAAAAGCAGGCTATCCCTCCCTTCTAATCCTC	814	0.17383616262009965	No Hit
AAACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCT	804	0.17170058322673235	Illumina PCR Primer Index 11 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTT	792	0.16913788795469153	No Hit
AATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCT	752	0.16059557038122227	Illumina PCR Primer Index 11 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCC	618	0.13197880651010022	No Hit
GCAAGAGGGAAACACTAACTTTTTTTCTTTAGGAAGTGAATATTATTTTTT	498	0.1063518537896924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCGA	45	3.8380676E-10	45.000004	42
TGTATCG	45	3.8380676E-10	45.000004	1
CGGGCTA	65	0.0	45.000004	6
CAAATCG	45	3.8380676E-10	45.000004	41
ACGCTCG	45	3.8380676E-10	45.000004	11
ACGTCCA	65	0.0	45.000004	27
CATCGGG	45	3.8380676E-10	45.000004	3
TAGTGCG	65	0.0	45.000004	1
TCACGGT	35	1.2098644E-7	45.0	12
TCCGGCT	25	3.887253E-5	45.0	21
TCGCCTG	25	3.887253E-5	45.0	30
TCGCCTA	20	7.0289994E-4	45.0	32
GTTGATC	35	1.2098644E-7	45.0	16
GTTGACG	35	1.2098644E-7	45.0	12
CTATGTC	25	3.887253E-5	45.0	11
CGGCGTA	20	7.0289994E-4	45.0	18
TTAGGCA	20	7.0289994E-4	45.0	44
CGTGGAC	35	1.2098644E-7	45.0	17
TTAGGAG	20	7.0289994E-4	45.0	44
AACCGCG	35	1.2098644E-7	45.0	1