SRR3548567_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548567_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	516220
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16267	3.151175855255511	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3880	0.7516175274107939	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2539	0.49184456239587776	No Hit
CTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCT	2348	0.4548448335980783	TruSeq Adapter, Index 13 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1773	0.34345821548952	No Hit
AATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCT	909	0.17608771454031227	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGT	879	0.17027623881290924	No Hit
AAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCT	809	0.15671612878230212	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTT	682	0.1321142148696292	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCC	658	0.12746503428770678	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	612	0.11855410483902214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTACGC	35	1.2101918E-7	45.000004	32
TTAACGG	35	1.2101918E-7	45.000004	2
TCAAACG	70	0.0	45.000004	1
ATTTACG	25	3.8878097E-5	45.0	1
CTTCGAT	40	6.8030204E-9	45.0	41
AACGTCA	20	7.029671E-4	45.0	29
CTAGAAC	55	1.8189894E-12	45.0	37
AGCCGTA	25	3.8878097E-5	45.0	38
GGTACGA	40	6.8030204E-9	45.0	9
TCGCACT	25	3.8878097E-5	45.0	32
ACCGGCA	40	6.8030204E-9	45.0	11
GCGACGA	20	7.029671E-4	45.0	38
GGTAATC	20	7.029671E-4	45.0	8
CGTATGG	20	7.029671E-4	45.0	2
CGAGTTG	25	3.8878097E-5	45.0	30
ATAGGTG	20	7.029671E-4	45.0	24
TTTACGG	25	3.8878097E-5	45.0	2
GCGAATT	25	3.8878097E-5	45.0	36
ACGTTGG	25	3.8878097E-5	45.0	2
GACGTTG	20	7.029671E-4	45.0	1