SRR3548566_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548566_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398435
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10291	2.582855421837941	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2308	0.5792663797106178	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1723	0.4324419290473979	No Hit
CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	1319	0.33104521440134527	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1053	0.26428401119379574	No Hit
CAGACAGGGGAAACTAACCAACCATATAATTAACCTCCAACCCTCACACAC	647	0.16238533261385169	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	619	0.1553578375393728	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGT	544	0.1365341900184472	No Hit
GGACATTGGTGTTGATTATTAACAGGTAACTAAATCAGATATTTATTTGTT	543	0.13628320805150151	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCC	511	0.1282517851092399	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCT	433	0.10867519168747725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAT	40	6.7957444E-9	45.000004	24
TCACGCG	30	2.161918E-6	45.000004	1
TCGCCTG	20	7.027731E-4	45.000004	23
ACCGGAC	20	7.027731E-4	45.000004	45
CGAACAG	20	7.027731E-4	45.000004	1
ACTGCGT	20	7.027731E-4	45.000004	37
CAAGTTA	30	2.161918E-6	45.000004	19
ATTAGCA	20	7.027731E-4	45.000004	15
GATCGCG	20	7.027731E-4	45.000004	41
CCTAGTT	20	7.027731E-4	45.000004	28
CGAAACG	20	7.027731E-4	45.000004	1
CCGATCG	30	2.161918E-6	45.000004	26
GCGCGTT	20	7.027731E-4	45.000004	21
GCGCGAT	20	7.027731E-4	45.000004	24
TCTTCGT	20	7.027731E-4	45.000004	36
GACAACG	40	6.7957444E-9	45.000004	1
TAGCGAT	30	2.161918E-6	45.000004	45
ACCGATC	30	2.161918E-6	45.000004	25
AAGACGT	20	7.027731E-4	45.000004	38
GAATCGG	30	2.161918E-6	45.000004	2