##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548566_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 398435 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.639331384040055 31.0 31.0 34.0 30.0 34.0 2 31.85155922546965 33.0 31.0 34.0 30.0 34.0 3 31.990605744977223 33.0 31.0 34.0 30.0 34.0 4 35.72393489527777 37.0 35.0 37.0 33.0 37.0 5 35.473984464216244 37.0 35.0 37.0 33.0 37.0 6 34.07872300375218 37.0 35.0 37.0 32.0 37.0 7 34.88733168521842 37.0 35.0 37.0 32.0 37.0 8 35.58018999334898 37.0 35.0 37.0 32.0 37.0 9 37.257560204299324 39.0 37.0 39.0 34.0 39.0 10 36.71930176816796 39.0 37.0 39.0 32.0 39.0 11 36.67239072872614 39.0 35.0 39.0 32.0 39.0 12 36.55156299019915 39.0 35.0 39.0 32.0 39.0 13 36.51350157491184 39.0 35.0 39.0 32.0 39.0 14 37.656862474431215 39.0 37.0 41.0 33.0 41.0 15 37.64409251195302 39.0 36.0 41.0 33.0 41.0 16 37.58751113732478 39.0 36.0 41.0 32.0 41.0 17 37.53842659404922 39.0 36.0 41.0 32.0 41.0 18 37.41432354085359 39.0 36.0 41.0 32.0 41.0 19 37.32081518942864 39.0 35.0 41.0 32.0 41.0 20 37.23005509054175 39.0 35.0 40.0 32.0 41.0 21 37.17416893596195 39.0 35.0 40.0 32.0 41.0 22 37.17605632035338 39.0 35.0 40.0 32.0 41.0 23 36.97930653682533 39.0 35.0 40.0 31.0 41.0 24 36.79656907651185 39.0 35.0 40.0 31.0 41.0 25 36.8088169964988 39.0 35.0 40.0 31.0 41.0 26 36.70777918606548 39.0 35.0 40.0 31.0 41.0 27 36.68732164593974 39.0 35.0 40.0 31.0 41.0 28 36.56370549775998 39.0 35.0 40.0 31.0 41.0 29 36.380466073512615 38.0 35.0 40.0 30.0 41.0 30 36.38125917652817 38.0 35.0 40.0 30.0 41.0 31 36.29785535909245 38.0 35.0 40.0 30.0 41.0 32 36.21072445944759 38.0 35.0 40.0 30.0 41.0 33 36.1067752581977 38.0 35.0 40.0 30.0 41.0 34 36.00891236964624 38.0 35.0 40.0 30.0 41.0 35 35.89517487168547 38.0 35.0 40.0 29.0 41.0 36 35.79533926487382 38.0 35.0 40.0 29.0 41.0 37 35.713062356469685 38.0 35.0 40.0 29.0 41.0 38 35.587468470390405 38.0 34.0 40.0 28.0 41.0 39 35.54002283935899 38.0 34.0 40.0 28.0 41.0 40 35.37452282053535 38.0 34.0 40.0 27.0 41.0 41 35.201842207637384 38.0 34.0 40.0 26.0 41.0 42 35.05143875412551 38.0 34.0 40.0 26.0 41.0 43 34.98529998619599 37.0 34.0 40.0 26.0 41.0 44 34.85646341310377 37.0 34.0 40.0 26.0 41.0 45 34.686222344924516 37.0 33.0 40.0 25.0 41.0 46 34.54436733720682 37.0 33.0 40.0 24.0 41.0 47 34.47344736280698 37.0 33.0 40.0 24.0 41.0 48 34.32189190206684 37.0 33.0 40.0 23.0 41.0 49 34.145027419779886 36.0 33.0 40.0 23.0 41.0 50 33.993544743810155 36.0 33.0 40.0 23.0 41.0 51 32.77455293837138 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 0.0 9 0.0 10 4.0 11 5.0 12 5.0 13 5.0 14 12.0 15 28.0 16 74.0 17 138.0 18 287.0 19 544.0 20 894.0 21 1246.0 22 1759.0 23 2377.0 24 2885.0 25 3519.0 26 4079.0 27 4677.0 28 5815.0 29 7461.0 30 9520.0 31 11983.0 32 15528.0 33 20515.0 34 30036.0 35 40302.0 36 40618.0 37 53677.0 38 72123.0 39 68311.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.78180882703578 32.06646002484722 21.67128891789125 25.48044223022576 2 25.647094256277686 32.03031862160704 18.692885916146924 23.629701205968352 3 20.533336679759557 34.900548395597774 19.811261560856853 24.754853363785813 4 20.336315835707204 35.52122679985443 18.304114849348075 25.83834251509029 5 18.12390979708108 38.828165196330644 15.451955776977425 27.59596922961085 6 17.332563655301367 43.48538657497459 17.515529509204764 21.66652026051928 7 81.77419152433897 10.531454315007467 4.082472674338349 3.6118814863152084 8 83.20052204249124 9.293611254031397 3.2409301391695005 4.264936564307854 9 76.5013113807773 12.132970246087819 6.312949414584562 5.0527689585503275 10 37.43647018961688 31.93444351023379 12.500156863729343 18.128929436419995 11 26.597311983134013 33.23980072031824 22.17099401408009 17.991893282467654 12 25.457853853200646 28.326828717356655 26.94391807948599 19.271399349956706 13 25.371265074604388 28.968338624869805 26.1219521377389 19.538444162786902 14 21.36835368378782 30.491046218329217 27.229535557870165 20.9110645400128 15 19.678241118375645 32.91829282066084 27.175574434976845 20.227891625986675 16 21.540778295079498 30.6948435754891 26.578488335613088 21.185889793818312 17 21.10883832996599 30.626074516545987 27.63788321809078 20.627203935397244 18 22.28293197133786 30.589682131338865 25.861683838016237 21.26570205930704 19 20.261523209557396 34.471620214087615 25.754765520097383 19.512091056257606 20 22.86721799038739 31.631759258097308 25.571046720293143 19.929976031222157 21 22.600926123458027 31.906835493869767 26.098359832846008 19.393878549826198 22 21.791258298091282 28.879992972504926 25.43375958437386 23.89498914502993 23 20.84555824663998 31.22190570607502 25.19156198627129 22.740974061013716 24 21.453436570582404 32.09431902317819 24.808814486679132 21.64342991956028 25 21.92829445204362 31.061779211163675 24.144214238206985 22.865712098585718 26 23.00826985581086 31.96104759873003 23.673121086249953 21.35756145920916 27 19.43252977273583 29.741865046996374 27.682056044273217 23.14354913599458 28 21.703414609660296 31.739681503883947 26.1570896131113 20.39981427334446 29 20.897511513797735 33.18709450725965 24.130661211991917 21.784732766950697 30 22.35948147125629 31.405624505879253 25.0108549700704 21.22403905279406 31 23.516759320842798 32.24013954597362 22.11929172888928 22.1238094042943 32 22.682495262715374 30.95210009160842 23.66584260920853 22.69956203646768 33 21.90445116518378 30.889103617905057 24.7641396965628 22.442305520348363 34 21.038061415287313 32.32396752293348 24.249877646291115 22.388093415488097 35 22.421975981025764 30.31109214802916 26.272290335939363 20.99464153500571 36 24.42832582478949 30.91821752607075 25.242009361627364 19.41144728751239 37 23.261008696525153 32.56742003087078 23.214075068706315 20.957496203897747 38 23.270044047335197 31.128540414371226 24.571134563981577 21.030280974311996 39 22.9392498149008 29.95394480906547 24.452169111649326 22.654636264384404 40 24.609534804924266 29.10562576078909 24.954133045540676 21.330706388745966 41 23.10866264258913 29.109892454227165 26.557656832356596 21.22378807082711 42 21.68534390804021 30.57236437561961 25.345915895942877 22.396375820397303 43 21.7089362129331 28.724635134965553 27.34749708233463 22.218931569766713 44 21.811336855446935 26.724810822342416 26.87012938120396 24.59372294100669 45 22.56428275628396 30.247342728424965 26.47884849473565 20.709526020555423 46 20.70174557958011 29.777002522368768 27.56409451980875 21.95715737824237 47 21.27549035601792 29.898979758304367 26.986835995833697 21.838693889844016 48 22.207135417320263 29.101861031284905 27.52293347722966 21.168070074165172 49 22.615734059507826 28.334609158331975 27.62859688531379 21.421059896846412 50 22.508564759622022 27.689585503281588 27.338712713491535 22.463137023604855 51 20.219860203044412 28.652101346518254 27.998544304591714 23.129494145845623 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 11778.0 1 8844.5 2 5911.0 3 3655.0 4 1399.0 5 1152.5 6 906.0 7 913.5 8 921.0 9 992.5 10 1064.0 11 1165.0 12 1266.0 13 1298.0 14 1330.0 15 1380.0 16 1430.0 17 1429.0 18 1428.0 19 1461.0 20 1494.0 21 1498.5 22 1503.0 23 1726.0 24 1949.0 25 2105.5 26 3426.0 27 4590.0 28 5928.5 29 7267.0 30 7330.5 31 7394.0 32 8159.5 33 8925.0 34 10271.0 35 11617.0 36 12455.5 37 13294.0 38 13516.5 39 13739.0 40 15126.0 41 16513.0 42 16948.0 43 17383.0 44 20726.0 45 24069.0 46 26448.0 47 28827.0 48 29399.5 49 29972.0 50 29877.0 51 29782.0 52 28169.5 53 26557.0 54 23318.0 55 20079.0 56 18386.5 57 16694.0 58 16686.5 59 16679.0 60 16379.5 61 16080.0 62 14439.5 63 12799.0 64 12107.5 65 11416.0 66 10381.0 67 9346.0 68 7969.0 69 6592.0 70 5940.5 71 5289.0 72 4307.5 73 3326.0 74 2762.0 75 1704.5 76 1211.0 77 988.0 78 765.0 79 732.5 80 700.0 81 515.5 82 331.0 83 286.0 84 241.0 85 161.5 86 82.0 87 50.5 88 19.0 89 15.0 90 11.0 91 6.5 92 2.0 93 3.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 398435.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.31711412455125 #Duplication Level Percentage of deduplicated Percentage of total 1 77.78245607990584 19.692273174628713 2 9.014851252121352 4.5646003593162 3 3.3647707083471188 2.5555885207851343 4 1.7578094568784797 1.7801065051603167 5 1.032886595587426 1.307485390910304 6 0.6679266335648919 1.0145984885273815 7 0.5039446448385211 0.8930896860083298 8 0.3699593622607401 0.7493042716641085 9 0.2779694667791311 0.6333646242229127 >10 3.5026152594504536 21.1273427408635 >50 1.160872485361683 20.712187671428847 >100 0.5539391532216816 20.019081220140993 >500 0.004999450841350917 0.725002511500516 >1k 0.003999560673080734 1.6208767741402945 >5k 0.0 0.0 >10k+ 9.998901682701834E-4 2.6050980607024474 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10291 2.582855421837941 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2308 0.5792663797106178 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1723 0.4324419290473979 No Hit CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT 1319 0.33104521440134527 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1053 0.26428401119379574 No Hit CAGACAGGGGAAACTAACCAACCATATAATTAACCTCCAACCCTCACACAC 647 0.16238533261385169 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 619 0.1553578375393728 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGT 544 0.1365341900184472 No Hit GGACATTGGTGTTGATTATTAACAGGTAACTAAATCAGATATTTATTTGTT 543 0.13628320805150151 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCC 511 0.1282517851092399 No Hit AATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCT 433 0.10867519168747725 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.39730445367500344 0.0 2 0.0 0.0 0.0 0.5172738338750361 0.0 3 0.0 0.0 0.0 0.6633453386374188 0.0 4 0.0 0.0 0.0 1.3477731624982745 0.0 5 0.0 0.0 0.0 1.4531855886154579 0.0 6 0.0 0.0 0.0 2.145644835418575 0.0 7 0.0 0.0 0.0 2.6656794709300136 0.0 8 0.0 0.0 0.0 3.2268751490205427 0.0 9 0.0 0.0 0.0 4.008182012122429 0.0 10 0.0 0.0 0.0 5.142871484683825 0.0 11 0.0 0.0 0.0 6.059959591903322 0.0 12 0.0 0.0 0.0 6.507711420934406 0.0 13 0.0 0.0 0.0 6.70071655351563 0.0 14 0.0 0.0 0.0 6.903008018873844 0.0 15 0.0 0.0 0.0 7.091746458016991 0.0 16 0.0 0.0 0.0 7.467215480567721 0.0 17 0.0 0.0 0.0 7.92224578664023 0.0 18 0.0 0.0 0.0 8.584587197409865 0.0 19 0.0 0.0 0.0 8.813984715198213 0.0 20 0.0 0.0 0.0 9.069735339515855 0.0 21 0.0 0.0 0.0 9.342050773651913 0.0 22 0.0 0.0 0.0 9.633189855308895 0.0 23 0.0 0.0 0.0 9.97703515002447 0.0 24 0.0 0.0 0.0 10.200660082573068 0.0 25 0.0 0.0 0.0 10.404708421699901 0.0 26 0.0 0.0 0.0 10.571360447751829 0.0 27 0.0 0.0 0.0 10.780930390151468 0.0 28 0.0 0.0 0.0 10.978202216170768 0.0 29 0.0 0.0 0.0 11.186266266768733 0.0 30 0.0 0.0 0.0 11.426957973069635 0.0 31 0.0 0.0 0.0 11.637029879403165 0.0 32 0.0 0.0 0.0 11.846348839835859 0.0 33 0.0 0.0 0.0 12.084530726467303 0.0 34 0.0 0.0 0.0 12.281049606585766 0.0 35 0.0 0.0 0.0 12.502415701431852 0.0 36 0.0 0.0 0.0 12.708220914327306 0.0 37 0.0 0.0 0.0 12.91277121738803 0.0 38 0.0 0.0 0.0 13.141415789275541 0.0 39 0.0 0.0 0.0 13.363785811989409 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGACAT 40 6.7957444E-9 45.000004 24 TCACGCG 30 2.161918E-6 45.000004 1 TCGCCTG 20 7.027731E-4 45.000004 23 ACCGGAC 20 7.027731E-4 45.000004 45 CGAACAG 20 7.027731E-4 45.000004 1 ACTGCGT 20 7.027731E-4 45.000004 37 CAAGTTA 30 2.161918E-6 45.000004 19 ATTAGCA 20 7.027731E-4 45.000004 15 GATCGCG 20 7.027731E-4 45.000004 41 CCTAGTT 20 7.027731E-4 45.000004 28 CGAAACG 20 7.027731E-4 45.000004 1 CCGATCG 30 2.161918E-6 45.000004 26 GCGCGTT 20 7.027731E-4 45.000004 21 GCGCGAT 20 7.027731E-4 45.000004 24 TCTTCGT 20 7.027731E-4 45.000004 36 GACAACG 40 6.7957444E-9 45.000004 1 TAGCGAT 30 2.161918E-6 45.000004 45 ACCGATC 30 2.161918E-6 45.000004 25 AAGACGT 20 7.027731E-4 45.000004 38 GAATCGG 30 2.161918E-6 45.000004 2 >>END_MODULE