SRR3548563_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548563_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	660954
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15722	2.378682934061977	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3762	0.5691772801132908	No Hit
CTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGCT	3202	0.4844512628715463	Illumina Paired End PCR Primer 2 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2775	0.4198476747247161	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1842	0.27868807814159535	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTT	1071	0.16203850797483638	No Hit
AAACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCT	1049	0.1587099858689107	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGT	869	0.13147662318406422	No Hit
AATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCT	767	0.11604438432931792	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGGC	130	0.0	45.000004	4
TAGCGAT	55	1.8189894E-12	45.000004	45
CCGACAG	55	1.8189894E-12	45.000004	1
CTTGTCA	20	7.031108E-4	45.0	33
AAACTCG	20	7.031108E-4	45.0	20
AATCCGA	40	6.8066583E-9	45.0	36
TTGGCGC	35	1.210883E-7	45.0	30
ATCTCGC	20	7.031108E-4	45.0	41
GTCGCAA	25	3.889001E-5	45.0	33
TCACCGC	20	7.031108E-4	45.0	35
CGTATCT	25	3.889001E-5	45.0	16
AGTTTAC	20	7.031108E-4	45.0	17
GGTAAGC	40	6.8066583E-9	45.0	8
TTGTGCG	25	3.889001E-5	45.0	11
AGTCACG	20	7.031108E-4	45.0	38
TTAGCTA	25	3.889001E-5	45.0	43
CGAAACT	20	7.031108E-4	45.0	43
CGAAACG	25	3.889001E-5	45.0	1
ACGCAAT	25	3.889001E-5	45.0	12
TTGCTCG	40	6.8066583E-9	45.0	1