SRR3548560_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548560_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695276
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14992	2.1562660008399543	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3528	0.5074243897387513	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3004	0.4320586357072587	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1620	0.23300099528820206	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	1484	0.21344041790598267	No Hit
GGCCTCAGGGATTTTTTTTTCTTTTAGAATGTAAGCTCGTCTAGAGCAGGG	1206	0.17345629649232822	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	846	0.12167829753939442	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTAGC	25	3.889209E-5	45.000004	31
TCGTTCC	25	3.889209E-5	45.000004	27
TCCGCGC	25	3.889209E-5	45.000004	23
CGTATCC	45	3.8380676E-10	45.000004	29
CGTGAGT	25	3.889209E-5	45.000004	34
GACCGTA	50	2.1827873E-11	45.000004	26
TAGAACG	25	3.889209E-5	45.000004	1
TGAACGG	85	0.0	45.000004	2
GCACGAG	25	3.889209E-5	45.000004	1
CGTCTAA	25	3.889209E-5	45.000004	20
CGATTCG	25	3.889209E-5	45.000004	11
CCGTATC	45	3.8380676E-10	45.000004	28
ACCTAGC	25	3.889209E-5	45.000004	11
ACGGATA	25	3.889209E-5	45.000004	5
CGAATTG	25	3.889209E-5	45.000004	1
GAACGAA	25	3.889209E-5	45.000004	12
CATACCG	50	2.1827873E-11	45.000004	1
TCATCGG	45	3.8380676E-10	45.000004	2
CGGCTAG	45	3.8380676E-10	45.000004	1
ACCGTAT	45	3.8380676E-10	45.000004	27