SRR3548559_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548559_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	692255
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14869	2.1479079241031123	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3517	0.5080497793443167	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2983	0.4309105748604199	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1530	0.22101682183588417	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	1407	0.20324880282554836	No Hit
GGCCTCAGGGATTTTTTTTTCTTTTAGAATGTAAGCTCGTCTAGAGCAGGG	1164	0.16814613112220209	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	787	0.11368643057832735	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACT	30	2.1642463E-6	45.000004	42
GACACGT	30	2.1642463E-6	45.000004	23
ATGCTCG	55	1.8189894E-12	45.000004	1
GCTTGCG	30	2.1642463E-6	45.000004	22
CCTCGCG	30	2.1642463E-6	45.000004	1
TCGTATA	30	2.1642463E-6	45.000004	35
TCATCGG	30	2.1642463E-6	45.000004	2
CGCACTA	30	2.1642463E-6	45.000004	43
TACCGTT	30	2.1642463E-6	45.000004	27
GATACGA	20	7.0313405E-4	45.0	8
AGCCGAT	20	7.0313405E-4	45.0	37
AATCCCG	20	7.0313405E-4	45.0	1
GTCGCGC	20	7.0313405E-4	45.0	43
GGTACGT	25	3.889193E-5	45.0	13
ACACGTC	20	7.0313405E-4	45.0	19
GTCGATC	20	7.0313405E-4	45.0	25
ATGATCG	20	7.0313405E-4	45.0	32
CTCGTAC	40	6.8084773E-9	45.0	30
GATCGCC	25	3.889193E-5	45.0	9
CCGATTA	25	3.889193E-5	45.0	42