SRR3548553_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548553_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	535833
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15650	2.9206861092915144	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3836	0.7158946910697923	No Hit
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT	3268	0.6098915147070075	TruSeq Adapter, Index 19 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3046	0.5684606957764826	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1800	0.3359255588961486	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGT	1504	0.28068446698878197	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTT	1415	0.2640748143544724	No Hit
AATCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	1243	0.2319752609488404	No Hit
AAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	1028	0.19185081919180041	No Hit
AACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTC	960	0.17916029807794595	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCC	907	0.16926915662155934	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCT	761	0.14202186128887173	No Hit
AACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	628	0.1172006949926563	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCC	30	2.163324E-6	45.000004	17
CGGTTAC	30	2.163324E-6	45.000004	35
ATAGCGG	35	1.210301E-7	45.000004	2
CACGCAT	35	1.210301E-7	45.000004	1
CGACATT	30	2.163324E-6	45.000004	12
ATATGCG	30	2.163324E-6	45.000004	1
CATTCCG	30	2.163324E-6	45.000004	44
ATCACGC	35	1.210301E-7	45.000004	42
ATCCGGA	30	2.163324E-6	45.000004	18
TGTTGCG	30	2.163324E-6	45.000004	30
GTTACGA	30	2.163324E-6	45.000004	37
TCATGCG	30	2.163324E-6	45.000004	1
GCCTATT	30	2.163324E-6	45.000004	19
CTCGATC	35	1.210301E-7	45.000004	16
TTACGAA	30	2.163324E-6	45.000004	38
CGAGACC	35	1.210301E-7	45.000004	21
TCGAGTA	30	2.163324E-6	45.000004	30
ACGTAGC	30	2.163324E-6	45.000004	13
TCGAGAC	30	2.163324E-6	45.000004	20
GACGAGC	35	1.210301E-7	45.000004	9