SRR3548551_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548551_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	734471
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14432	1.9649516454700051	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3376	0.45965055121304993	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2954	0.4021942323114187	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1519	0.2068155175629807	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	1383	0.18829878919657822	TruSeq Adapter, Index 13 (95% over 22bp)
AATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGT	921	0.1253963737165933	No Hit
AATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT	789	0.10742425500802619	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	85	0.0	45.000004	2
TGATCGC	20	7.031623E-4	45.0	19
CTATGCG	25	3.8894254E-5	45.0	1
AAGTACG	20	7.031623E-4	45.0	1
ACCGGAT	20	7.031623E-4	45.0	27
CGAACAT	25	3.8894254E-5	45.0	22
CGAGTTT	20	7.031623E-4	45.0	39
TTTACGG	55	1.8189894E-12	45.0	2
ACGTTGC	20	7.031623E-4	45.0	31
ACGTTAT	20	7.031623E-4	45.0	29
ACGCAAA	20	7.031623E-4	45.0	10
ATAATGC	35	1.2111195E-7	45.0	25
TAGCGTC	35	1.2111195E-7	45.0	31
CGGTTGA	20	7.031623E-4	45.0	31
GACGTAC	20	7.031623E-4	45.0	36
ATTCGTT	20	7.031623E-4	45.0	34
TATATCG	50	2.1827873E-11	45.0	1
CACGATT	20	7.031623E-4	45.0	36
CAATTCG	20	7.031623E-4	45.0	24
TCGATCC	25	3.8894254E-5	45.0	19