##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548551_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 734471 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.65126737474999 31.0 31.0 34.0 30.0 34.0 2 31.857845987111812 33.0 31.0 34.0 30.0 34.0 3 32.03260850326289 33.0 31.0 34.0 30.0 34.0 4 35.76655170864473 37.0 35.0 37.0 35.0 37.0 5 35.5228756479153 37.0 35.0 37.0 33.0 37.0 6 32.75590867440648 37.0 35.0 37.0 26.0 37.0 7 34.21982488076452 37.0 35.0 37.0 27.0 37.0 8 35.3086820310128 37.0 35.0 37.0 32.0 37.0 9 37.13796732614358 39.0 37.0 39.0 34.0 39.0 10 36.68487659825916 38.0 37.0 39.0 32.0 39.0 11 36.743833316768125 39.0 37.0 39.0 32.0 39.0 12 36.6516921702831 39.0 35.0 39.0 32.0 39.0 13 36.61635925720689 39.0 35.0 39.0 32.0 39.0 14 37.771005254121675 40.0 37.0 41.0 33.0 41.0 15 37.80659277221292 40.0 37.0 41.0 33.0 41.0 16 37.75147282874341 40.0 37.0 41.0 33.0 41.0 17 37.72665088206342 39.0 37.0 41.0 33.0 41.0 18 37.60471005662579 39.0 36.0 41.0 33.0 41.0 19 37.543860819555846 39.0 36.0 41.0 32.0 41.0 20 37.409417117898464 39.0 35.0 41.0 32.0 41.0 21 37.320304001111005 39.0 35.0 41.0 32.0 41.0 22 37.28445643190813 39.0 35.0 41.0 32.0 41.0 23 37.11132910625471 39.0 35.0 41.0 32.0 41.0 24 36.987708160022656 39.0 35.0 40.0 31.0 41.0 25 36.988380752950086 39.0 35.0 40.0 31.0 41.0 26 36.95516909449114 39.0 35.0 40.0 31.0 41.0 27 36.848221372933715 39.0 35.0 40.0 31.0 41.0 28 36.730431834612936 39.0 35.0 40.0 31.0 41.0 29 36.55221785475533 39.0 35.0 40.0 30.0 41.0 30 36.52907875191805 39.0 35.0 40.0 30.0 41.0 31 36.15083645235823 38.0 35.0 40.0 30.0 41.0 32 36.23114595402678 38.0 35.0 40.0 30.0 41.0 33 36.208118496169355 38.0 35.0 40.0 30.0 41.0 34 36.11874668979442 38.0 35.0 40.0 30.0 41.0 35 36.093041113944594 38.0 35.0 40.0 30.0 41.0 36 35.99487658464391 38.0 35.0 40.0 30.0 41.0 37 35.882248584355274 38.0 35.0 40.0 29.0 41.0 38 35.76755379041514 38.0 35.0 40.0 29.0 41.0 39 35.69930194657107 38.0 35.0 40.0 28.0 41.0 40 35.5191137567038 38.0 34.0 40.0 27.0 41.0 41 35.452542033654154 38.0 34.0 40.0 27.0 41.0 42 35.36791513892312 38.0 34.0 40.0 27.0 41.0 43 35.30039851811712 38.0 34.0 40.0 27.0 41.0 44 35.09991681087477 38.0 34.0 40.0 26.0 41.0 45 34.890605619554755 37.0 34.0 40.0 26.0 41.0 46 34.58485495002525 37.0 33.0 40.0 24.0 41.0 47 34.52576752519841 37.0 33.0 40.0 24.0 41.0 48 34.51953991376106 37.0 33.0 40.0 24.0 41.0 49 34.38732094255594 37.0 33.0 40.0 24.0 41.0 50 34.25763032168731 36.0 33.0 40.0 24.0 41.0 51 33.17517505796689 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 7.0 10 16.0 11 19.0 12 24.0 13 28.0 14 47.0 15 73.0 16 166.0 17 316.0 18 516.0 19 995.0 20 1662.0 21 2479.0 22 3402.0 23 4408.0 24 5532.0 25 6175.0 26 7364.0 27 8639.0 28 10250.0 29 12561.0 30 15974.0 31 20708.0 32 27009.0 33 36549.0 34 53219.0 35 70420.0 36 77119.0 37 101514.0 38 134600.0 39 132644.0 40 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.578251557924002 32.53566172115713 18.98631804387103 26.899768677047835 2 23.59929799815105 32.31060178005667 18.259672607904193 25.83042761388809 3 19.89622462969947 33.79057852522428 19.80718095064339 26.506015894432867 4 20.56949831919844 35.41977831663878 17.828069454069663 26.182653910093112 5 18.571870094258315 36.65522532543831 15.914174964021724 28.858729616281646 6 17.301704219771782 43.705741955774975 16.629111292345105 22.363442532108145 7 82.18840498807985 10.329066770505575 3.877212306544438 3.605315934870131 8 83.93197280763978 8.829756382484808 3.642213239188477 3.59605757068693 9 77.67236555289453 12.108034217824802 6.2421797456945205 3.9774204835861457 10 36.52696975101808 35.10390471509427 12.423499362125938 15.945626171761717 11 26.46285557904941 32.586855028993654 22.097264561841108 18.853024830115825 12 26.12220223807339 27.665081398720986 27.21291923030317 18.999797132902458 13 24.18924641000121 28.863358798373252 26.32656701217611 20.620827779449428 14 21.1670712662583 31.01252466060607 26.07890577027548 21.741498302860155 15 20.371532708575288 32.06756972024763 26.679201765624512 20.881695805552567 16 22.37923621218537 30.29500143640797 25.30215624578778 22.023606105618875 17 21.339576375377654 30.76064269385721 25.69754285737626 22.202238073388873 18 22.902742245779613 29.081202661507398 25.453830035494935 22.56222505721805 19 21.964788262572654 32.14776349236389 24.332342597597453 21.555105647466 20 23.96105496336819 31.46332530487929 24.29884910364058 20.276770628111933 21 22.489928125140406 31.436094821987524 24.89805587967394 21.175921173198127 22 23.367021979084264 28.965200804388463 24.379315180585756 23.288462035941514 23 21.686901184662158 31.97893449843493 23.810878850220092 22.523285466682825 24 20.71940212751763 32.06212362366928 25.794074919227576 21.424399329585512 25 21.80889374801728 31.955243978319093 23.707947624889204 22.527914648774424 26 23.671458777814237 30.03467801996267 23.045293823718023 23.248569378505074 27 21.326505743589603 30.39412039413401 24.49613395219144 23.783239910084948 28 21.31411587387385 32.599244898709415 24.964770562758776 21.121868664657963 29 22.799674868034273 30.76050654144275 23.529860266777042 22.909958323745936 30 21.94736075352192 30.414679408717294 26.202532162604104 21.435427675156678 31 23.440408130477582 31.653666380292755 21.796095421058148 23.109830068171515 32 23.399970863383306 30.960650590697252 23.141689733154884 22.49768881276456 33 21.407924887435993 30.364030710538604 23.614274763741523 24.61376963828388 34 20.424632150214237 31.943126413432253 25.33918970252059 22.29305173383292 35 21.245222752157673 30.42339316324266 24.745701327894498 23.585682756705165 36 22.044573577445536 31.998540446117 24.109869552371705 21.847016424065757 37 21.1763296304415 31.146362484019107 23.65566509773701 24.021642787802378 38 22.011760845560953 31.852721210231582 24.320497337539535 21.81502060666793 39 22.254112143297693 28.879969392937227 23.94607819777772 24.919840265987357 40 22.332808238854902 30.225699857448422 24.733447610593203 22.708044293103473 41 20.89762563804425 28.520118561522512 26.395187829063367 24.18706797136987 42 22.210271065841948 29.510082767052747 24.826167404839676 23.453478762265632 43 21.904745047796307 28.20070499720207 25.256000577286237 24.638549377715393 44 23.381181830187987 27.05103400951161 25.909532166688678 23.658251993611728 45 22.657259442510323 28.7493992274712 25.912527519806773 22.680813810211703 46 22.02660145873697 29.089916416032764 25.696725942889508 23.18675618234076 47 22.13348110408716 29.79545822775848 25.656969437867527 22.414091230286832 48 21.323918847714886 29.696747727275824 26.637675279214562 22.341658145794728 49 21.525969030771808 28.891406195751774 26.11730075115287 23.46532402232355 50 20.851606121957165 28.457216146042523 26.56728448093934 24.12389325106097 51 20.933978332704765 27.42463623478667 27.460852777032724 24.180532655475844 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 16824.0 1 12987.0 2 9150.0 3 5746.5 4 2343.0 5 2135.5 6 1928.0 7 2058.5 8 2189.0 9 2343.0 10 2497.0 11 2636.5 12 2776.0 13 3201.5 14 3627.0 15 3266.5 16 2906.0 17 2874.0 18 2842.0 19 2682.0 20 2522.0 21 2879.0 22 3236.0 23 3943.5 24 4651.0 25 5040.5 26 5968.0 27 6506.0 28 8223.0 29 9940.0 30 11644.5 31 13349.0 32 15635.5 33 17922.0 34 19209.5 35 20497.0 36 21663.5 37 22830.0 38 25683.5 39 28537.0 40 26997.0 41 25457.0 42 28679.5 43 31902.0 44 35636.0 45 39370.0 46 44435.5 47 49501.0 48 52425.5 49 55350.0 50 53026.5 51 50703.0 52 49244.0 53 47785.0 54 43183.0 55 38581.0 56 36895.5 57 35210.0 58 34782.5 59 34355.0 60 32485.0 61 30615.0 62 28025.0 63 25435.0 64 23118.5 65 20802.0 66 19593.5 67 18385.0 68 15833.0 69 13281.0 70 11791.0 71 10301.0 72 9837.5 73 9374.0 74 7711.5 75 4810.0 76 3571.0 77 3222.0 78 2873.0 79 2333.5 80 1794.0 81 1177.0 82 560.0 83 430.5 84 301.0 85 266.5 86 232.0 87 157.5 88 83.0 89 64.0 90 45.0 91 39.5 92 34.0 93 22.5 94 11.0 95 8.5 96 6.0 97 4.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 734471.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.81761432028299 #Duplication Level Percentage of deduplicated Percentage of total 1 77.39109799682716 18.432713239116545 2 8.625091414815564 4.108582015905221 3 3.211550160131223 2.2947438925274564 4 1.8162143042885543 1.7303156729010352 5 1.1598650732531175 1.3812609489154768 6 0.8245864944818779 1.1783809859570118 7 0.6096817486854986 1.0164815323814835 8 0.4744866606018842 0.9040912225867755 9 0.39802689824852117 0.8532046036423617 >10 3.6837593594422566 19.583655436200452 >50 1.0773632041829377 18.478254886669372 >100 0.722487522203281 26.279182770294145 >500 0.002894581419083658 0.49624468773270564 >1k 0.0023156651352669267 1.27294552852135 >5k 0.0 0.0 >10k+ 5.789162838167317E-4 1.9899425766486265 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 14432 1.9649516454700051 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3376 0.45965055121304993 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2954 0.4021942323114187 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1519 0.2068155175629807 No Hit CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT 1383 0.18829878919657822 TruSeq Adapter, Index 13 (95% over 22bp) AATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGT 921 0.1253963737165933 No Hit AATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT 789 0.10742425500802619 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2231538072980417 0.0 2 0.0 0.0 0.0 0.31437592498546574 0.0 3 0.0 0.0 0.0 0.43391774488032886 0.0 4 0.0 0.0 0.0 0.9672267523156122 0.0 5 0.0 0.0 0.0 1.0588573272464128 0.0 6 0.0 0.0 0.0 1.6424065756170088 0.0 7 0.0 0.0 0.0 2.0606667928345708 0.0 8 0.0 0.0 0.0 2.498669110148665 0.0 9 0.0 0.0 0.0 3.119115662837607 0.0 10 0.0 0.0 0.0 4.039914441822754 0.0 11 0.0 0.0 0.0 4.756076141876262 0.0 12 0.0 0.0 0.0 5.1231430512572995 0.0 13 0.0 0.0 0.0 5.290610521041675 0.0 14 1.3615241445884182E-4 0.0 0.0 5.452768046662156 0.0 15 1.3615241445884182E-4 0.0 0.0 5.592324271482468 0.0 16 1.3615241445884182E-4 0.0 0.0 5.850333096881974 0.0 17 1.3615241445884182E-4 0.0 0.0 6.1698828136168755 0.0 18 1.3615241445884182E-4 0.0 0.0 6.6299418220733015 0.0 19 1.3615241445884182E-4 0.0 0.0 6.794550091154042 0.0 20 1.3615241445884182E-4 0.0 0.0 6.997008731454339 0.0 21 1.3615241445884182E-4 0.0 0.0 7.199875828998014 0.0 22 1.3615241445884182E-4 0.0 0.0 7.402062164469394 0.0 23 1.3615241445884182E-4 0.0 0.0 7.637469689068731 0.0 24 1.3615241445884182E-4 0.0 0.0 7.803711787122977 0.0 25 1.3615241445884182E-4 0.0 0.0 7.953207138198786 0.0 26 1.3615241445884182E-4 0.0 0.0 8.087317266440744 0.0 27 1.3615241445884182E-4 0.0 0.0 8.241305647193695 0.0 28 1.3615241445884182E-4 0.0 0.0 8.395566332775562 0.0 29 1.3615241445884182E-4 0.0 0.0 8.558540772882797 0.0 30 1.3615241445884182E-4 0.0 0.0 8.779788446378413 0.0 31 1.3615241445884182E-4 0.0 0.0 8.921931567073445 0.0 32 1.3615241445884182E-4 0.0 0.0 9.083680635450548 0.0 33 1.3615241445884182E-4 0.0 0.0 9.243115112781853 0.0 34 1.3615241445884182E-4 0.0 0.0 9.40214113286978 0.0 35 1.3615241445884182E-4 0.0 0.0 9.576552375791556 0.0 36 1.3615241445884182E-4 0.0 0.0 9.733808414491518 0.0 37 1.3615241445884182E-4 0.0 0.0 9.882078393837197 0.0 38 1.3615241445884182E-4 0.0 0.0 10.03565831734677 0.0 39 1.3615241445884182E-4 0.0 0.0 10.223004039642136 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGCGG 85 0.0 45.000004 2 TGATCGC 20 7.031623E-4 45.0 19 CTATGCG 25 3.8894254E-5 45.0 1 AAGTACG 20 7.031623E-4 45.0 1 ACCGGAT 20 7.031623E-4 45.0 27 CGAACAT 25 3.8894254E-5 45.0 22 CGAGTTT 20 7.031623E-4 45.0 39 TTTACGG 55 1.8189894E-12 45.0 2 ACGTTGC 20 7.031623E-4 45.0 31 ACGTTAT 20 7.031623E-4 45.0 29 ACGCAAA 20 7.031623E-4 45.0 10 ATAATGC 35 1.2111195E-7 45.0 25 TAGCGTC 35 1.2111195E-7 45.0 31 CGGTTGA 20 7.031623E-4 45.0 31 GACGTAC 20 7.031623E-4 45.0 36 ATTCGTT 20 7.031623E-4 45.0 34 TATATCG 50 2.1827873E-11 45.0 1 CACGATT 20 7.031623E-4 45.0 36 CAATTCG 20 7.031623E-4 45.0 24 TCGATCC 25 3.8894254E-5 45.0 19 >>END_MODULE