SRR3548548_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548548_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	804944
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16727	2.0780327575582898	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3801	0.472206762209545	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2946	0.3659881929674611	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGT	2149	0.266975093919577	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCC	2015	0.2503279731260808	No Hit
AATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCT	1837	0.22821463356457097	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1679	0.20858593889761276	No Hit
GCAGTCTGGGGTGTGATTGCTCTTAGGTGAGTTCCGAGTCTTAATCTATGC	1607	0.19964121727722672	No Hit
CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	1215	0.150942177344014	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	833	0.10348545985807708	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCACG	50	2.1827873E-11	45.000004	1
CACGGTT	50	2.1827873E-11	45.000004	44
CAACGTT	25	3.8897597E-5	45.000004	38
TTTACGT	25	3.8897597E-5	45.000004	12
CATGCGC	25	3.8897597E-5	45.000004	35
CTATCAT	25	3.8897597E-5	45.000004	36
CACGCGA	25	3.8897597E-5	45.000004	11
CGTCTAC	25	3.8897597E-5	45.000004	5
TCGATAG	50	2.1827873E-11	45.000004	1
GTTACGC	25	3.8897597E-5	45.000004	9
CGCTACG	50	2.1827873E-11	45.000004	1
GTCCGTT	25	3.8897597E-5	45.000004	11
CACGTTA	25	3.8897597E-5	45.000004	33
CGTCATA	25	3.8897597E-5	45.000004	28
TAATGCG	25	3.8897597E-5	45.000004	1
CGATACG	25	3.8897597E-5	45.000004	1
GCCCGGT	25	3.8897597E-5	45.000004	26
TACGTTA	25	3.8897597E-5	45.000004	14
AAGTCGA	50	2.1827873E-11	45.000004	32
TCACGCG	40	6.8102963E-9	45.0	1