SRR3548543_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548543_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554555
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16927	3.052357295489176	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3907	0.7045288564705033	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3338	0.6019240652414999	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2118	0.3819278520615629	No Hit
CTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGCT	1939	0.3496497191441787	TruSeq Adapter, Index 13 (95% over 24bp)
AAAAACTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTT	638	0.11504720000721298	No Hit
AGCTCTGGGAATGATACCTGTCTCTTATACACATCTGACGCCTGAACACTC	602	0.10855550847075582	No Hit
GGGGAAGGGGAAGAAGATTGATCAAACTGAATGAAACACACACACACACAC	595	0.10729323511644472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	30	2.1634623E-6	45.000004	1
GAGTGTA	30	2.1634623E-6	45.000004	10
TATGGAT	30	2.1634623E-6	45.000004	36
ATTCGCC	30	2.1634623E-6	45.000004	43
CGACATA	30	2.1634623E-6	45.000004	30
ATGTCCA	30	2.1634623E-6	45.000004	22
CCCACAT	30	2.1634623E-6	45.000004	12
TAGCACG	60	0.0	45.000004	1
GTATGGA	30	2.1634623E-6	45.000004	35
AAATTCG	30	2.1634623E-6	45.000004	13
ATGACTC	30	2.1634623E-6	45.000004	12
AATTCGT	30	2.1634623E-6	45.000004	14
GTATCAT	30	2.1634623E-6	45.000004	34
CGTAAGT	30	2.1634623E-6	45.000004	45
CGTCGAA	30	2.1634623E-6	45.000004	43
GCGTCTC	30	2.1634623E-6	45.000004	17
TATGTCC	30	2.1634623E-6	45.000004	21
CTTAACG	40	6.8048394E-9	45.0	1
TTGATCG	20	7.0301257E-4	45.0	14
TCACCGG	35	1.2104101E-7	45.0	2