SRR3548540_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548540_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	665362
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	5300	0.7965588657001752	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1565	0.23521030656995742	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	1190	0.1788500094685299	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	1014	0.15239824336225996	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT	763	0.11467441783570448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	75	0.0	45.000004	1
GATACTA	35	1.2109012E-7	45.000004	9
TCGCACG	35	1.2109012E-7	45.000004	1
CCTAACG	35	1.2109012E-7	45.000004	1
CACTCCG	35	1.2109012E-7	45.000004	1
TAACACG	70	0.0	45.000004	1
CGGGTTG	20	7.031142E-4	45.0	6
CTTCGAC	20	7.031142E-4	45.0	33
AACGTAG	25	3.889029E-5	45.0	1
TAATACG	25	3.889029E-5	45.0	1
AACCGAT	25	3.889029E-5	45.0	34
TCGTTCG	25	3.889029E-5	45.0	45
ATTAGCG	20	7.031142E-4	45.0	1
CTCAACG	20	7.031142E-4	45.0	1
CGGCCTA	20	7.031142E-4	45.0	45
GAGTACG	20	7.031142E-4	45.0	1
CGGCACG	25	3.889029E-5	45.0	1
CGCGCAA	20	7.031142E-4	45.0	11
ATTAACG	40	6.8084773E-9	45.0	1
ATTCGGT	20	7.031142E-4	45.0	11