SRR3548534_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548534_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	867441
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	4384	0.5053946032064428	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1678	0.1934425511360427	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	1270	0.14640765193252336	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC	1219	0.14052828953208346	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGT	1019	0.1174719663931034	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1012	0.1166649950832391	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAT	20	7.0323277E-4	45.000004	30
ACGTTAG	30	2.164883E-6	45.000004	1
GGCGTAC	20	7.0323277E-4	45.000004	8
CCTCGAA	20	7.0323277E-4	45.000004	20
ATTCACG	30	2.164883E-6	45.000004	1
CACTACG	30	2.164883E-6	45.000004	1
CGTACCG	20	7.0323277E-4	45.000004	1
ACATGCG	20	7.0323277E-4	45.000004	1
TTACGTC	20	7.0323277E-4	45.000004	8
TTACGTA	20	7.0323277E-4	45.000004	34
CATCGCG	20	7.0323277E-4	45.000004	1
TATACGC	20	7.0323277E-4	45.000004	18
AGAATCG	20	7.0323277E-4	45.000004	14
CGGAATA	25	3.8900107E-5	45.0	10
AAACTCG	25	3.8900107E-5	45.0	1
TACCACG	35	1.2114651E-7	45.0	1
TAAACCG	35	1.2114651E-7	45.0	1
CGTCTAA	25	3.8900107E-5	45.0	31
CCGTCTA	25	3.8900107E-5	45.0	37
TCGTCTA	25	3.8900107E-5	45.0	30