##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548534_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 867441 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.919836622894238 33.0 31.0 34.0 30.0 34.0 2 32.137625498448884 34.0 31.0 34.0 30.0 34.0 3 32.26912147339127 34.0 31.0 34.0 30.0 34.0 4 35.87962985378833 37.0 35.0 37.0 35.0 37.0 5 35.689462453354174 37.0 35.0 37.0 33.0 37.0 6 35.693020044014524 37.0 35.0 37.0 33.0 37.0 7 35.73961572026224 37.0 35.0 37.0 35.0 37.0 8 35.88273092925052 37.0 35.0 37.0 35.0 37.0 9 37.49362319742784 39.0 37.0 39.0 35.0 39.0 10 37.09760663837656 39.0 37.0 39.0 33.0 39.0 11 37.05605222718317 39.0 37.0 39.0 33.0 39.0 12 36.93307556364064 39.0 37.0 39.0 33.0 39.0 13 36.88714160386701 39.0 37.0 39.0 33.0 39.0 14 38.084306598373836 40.0 37.0 41.0 33.0 41.0 15 38.081421099532996 40.0 37.0 41.0 33.0 41.0 16 38.014028619813914 40.0 37.0 41.0 33.0 41.0 17 37.99839527990952 40.0 37.0 41.0 33.0 41.0 18 37.97816566198738 40.0 37.0 41.0 33.0 41.0 19 37.959794383710246 40.0 37.0 41.0 33.0 41.0 20 37.91385927112046 40.0 37.0 41.0 33.0 41.0 21 37.860317877527116 40.0 37.0 41.0 33.0 41.0 22 37.84769684624084 40.0 37.0 41.0 33.0 41.0 23 37.734098342135084 40.0 36.0 41.0 33.0 41.0 24 37.60625564159407 39.0 36.0 41.0 32.0 41.0 25 37.61098218783756 39.0 36.0 41.0 32.0 41.0 26 37.56592897960783 39.0 36.0 41.0 33.0 41.0 27 37.48501166073543 39.0 36.0 41.0 32.0 41.0 28 37.4055757106247 39.0 36.0 41.0 32.0 41.0 29 37.2695410984724 39.0 36.0 41.0 32.0 41.0 30 37.25124014198084 39.0 36.0 41.0 32.0 41.0 31 37.161687077276724 39.0 35.0 41.0 31.0 41.0 32 37.115650516865124 39.0 35.0 41.0 31.0 41.0 33 37.026950536117155 39.0 35.0 41.0 31.0 41.0 34 36.92893810645335 39.0 35.0 41.0 31.0 41.0 35 36.90084858797313 39.0 35.0 41.0 31.0 41.0 36 36.704396033851296 39.0 35.0 41.0 30.0 41.0 37 36.62964397578625 39.0 35.0 41.0 30.0 41.0 38 36.51728359623306 39.0 35.0 40.0 30.0 41.0 39 36.46461488447053 39.0 35.0 40.0 30.0 41.0 40 36.35832754043214 38.0 35.0 40.0 30.0 41.0 41 36.283118967168946 38.0 35.0 40.0 30.0 41.0 42 36.18054945523672 38.0 35.0 40.0 30.0 41.0 43 36.066033309470036 38.0 35.0 40.0 29.0 41.0 44 35.94542798876235 38.0 35.0 40.0 29.0 41.0 45 35.77603087702795 38.0 34.0 40.0 29.0 41.0 46 35.62140825716101 38.0 34.0 40.0 28.0 41.0 47 35.5320880613206 38.0 34.0 40.0 28.0 41.0 48 35.46679140137485 38.0 34.0 40.0 28.0 41.0 49 35.29155066454087 37.0 34.0 40.0 28.0 41.0 50 35.116110490511744 37.0 34.0 40.0 27.0 41.0 51 33.92939346883534 36.0 32.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 4.0 11 10.0 12 13.0 13 10.0 14 22.0 15 35.0 16 67.0 17 125.0 18 261.0 19 498.0 20 843.0 21 1304.0 22 1945.0 23 2586.0 24 3534.0 25 4641.0 26 5936.0 27 7644.0 28 9845.0 29 12646.0 30 16588.0 31 20952.0 32 27140.0 33 36883.0 34 56664.0 35 69880.0 36 80803.0 37 116798.0 38 175716.0 39 213988.0 40 58.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.91508240906298 30.982049499620146 21.354535928091938 26.748332163224937 2 25.859395624601554 29.108377399730934 19.22551504943852 25.806711926228985 3 21.46416874461779 29.457795976902172 20.661347572918505 28.416687705561532 4 22.025936057899038 31.361787141719148 18.777300127616748 27.834976672765066 5 19.107351393351248 33.15672189808875 17.625636786824693 30.110289921735312 6 21.239254312397037 36.596379465577485 18.84012860817047 23.324237613855008 7 85.3515109384961 4.5502806530934095 5.313329667377954 4.784878741032531 8 86.77546945555952 4.096416932102587 4.359028452655569 4.76908515968233 9 78.72201106472947 7.733321344045301 8.446914545196734 5.09775304602849 10 35.946998124368115 33.69358838237989 12.714755239837638 17.644658253414352 11 27.660094461755904 28.75515452924176 24.153227712317033 19.431523296685306 12 27.40220948744641 23.72749270555577 28.927269981474247 19.94302782552358 13 25.963033797111272 24.738051348737265 27.42342130473427 21.875493549417193 14 22.106172062422687 27.010597838930835 28.924157377850484 21.959072720795998 15 21.161785066650065 28.285958353363515 27.869791720704924 22.682464859281495 16 23.782597317857928 26.199591672517208 26.801015861597506 23.21679514802736 17 22.139719012589907 26.753750399162595 28.077875037034218 23.02865555121328 18 25.045161572948476 25.50490465633974 26.03231804814391 23.417615722567874 19 22.462276973304235 29.350468792690222 25.62249190434854 22.564762329657004 20 25.828500151595325 26.687348188522332 25.586524040251728 21.897627619630615 21 24.95904620602439 27.484520561052566 24.892413432152736 22.664019800770312 22 23.390755106110962 25.110987375510263 25.479888545733946 26.018368972644822 23 23.427645223133332 28.214253188401283 24.171096362749743 24.187005225715637 24 21.025406915283 28.42487270027587 26.42658117382047 24.123139210620664 25 24.029069412213627 27.767536927583546 23.43871225824004 24.764681401962786 26 26.02839847321028 26.007301937538113 23.806691175538162 24.15760841371344 27 22.792328239038735 24.9542043781652 25.577762637458918 26.675704745337146 28 23.238468091778 28.164912656883867 26.34357841052014 22.25304084081799 29 23.549613172538535 29.012001969009997 23.03684054592762 24.40154431252385 30 26.641581387091456 25.103609352105792 25.142343974979276 23.112465285823475 31 25.35734418825027 27.752435035927515 22.158279352716782 24.731941423105432 32 24.310932962587657 27.43725509861766 24.459876810065467 23.791935128729218 33 23.498082290322916 26.722739644540667 24.094895214775413 25.684282850361008 34 21.490568234611924 28.75988107548525 25.52554006554913 24.224010624353703 35 25.378786568769517 26.271988527173605 25.09945921394078 23.2497656901161 36 23.64564275841239 31.469575452393883 23.423033958505535 21.461747830688196 37 23.787669708948506 30.89455075330772 21.39684428105197 23.92093525669181 38 23.897302525474355 29.999850133899596 23.84404241902331 22.25880492160274 39 24.03218201583739 25.93144663441087 24.40304297352788 25.633328376223858 40 26.0484574743412 25.778467930383737 25.171510223750087 23.001564371524978 41 23.83136144129687 24.488927777220585 26.934166127725113 24.74554465375743 42 25.75195315877391 25.839567186702034 24.268163483164848 24.140316171359206 43 23.088717272990326 25.286330712982206 25.686242637827817 25.938709376199647 44 25.180386908158596 24.456994769673095 24.938295515199304 25.424322806969002 45 26.64469399071522 24.012123014706475 25.76082984318242 23.58235315139589 46 22.759588260181385 25.35169538908122 27.422729615040105 24.4659867356973 47 23.757465925636442 27.20242644744715 25.25105453857957 23.789053088336843 48 22.531215379489787 26.22034236334229 27.575938882298622 23.6725033748693 49 24.06872628801267 25.2481724981872 26.08776850529316 24.595332708506977 50 22.610183286240794 24.627035152823073 26.59466176950363 26.1681197914325 51 22.819534700342732 23.633307625533035 27.472185428173212 26.074972245951024 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1388.0 1 1194.0 2 1000.0 3 730.0 4 460.0 5 440.0 6 420.0 7 432.5 8 445.0 9 502.0 10 559.0 11 678.5 12 798.0 13 841.5 14 885.0 15 931.5 16 978.0 17 1155.5 18 1333.0 19 1372.0 20 1411.0 21 1694.0 22 1977.0 23 2229.0 24 2481.0 25 3139.5 26 4610.5 27 5423.0 28 7509.5 29 9596.0 30 10448.0 31 11300.0 32 14426.5 33 17553.0 34 17877.5 35 18202.0 36 21160.0 37 24118.0 38 25549.5 39 26981.0 40 29492.0 41 32003.0 42 35700.5 43 39398.0 44 46437.5 45 53477.0 46 61540.0 47 69603.0 48 76108.0 49 82613.0 50 80551.5 51 78490.0 52 74759.5 53 71029.0 54 65159.5 55 59290.0 56 54649.0 57 50008.0 58 46416.5 59 42825.0 60 41108.0 61 39391.0 62 35573.0 63 31755.0 64 28239.5 65 24724.0 66 21221.0 67 17718.0 68 15594.5 69 13471.0 70 11818.5 71 10166.0 72 9267.5 73 8369.0 74 6808.5 75 4079.5 76 2911.0 77 2194.5 78 1478.0 79 1331.0 80 1184.0 81 797.0 82 410.0 83 443.0 84 476.0 85 352.5 86 229.0 87 133.0 88 37.0 89 27.0 90 17.0 91 11.0 92 5.0 93 6.5 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 867441.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.093177488377343 #Duplication Level Percentage of deduplicated Percentage of total 1 74.52906905723165 18.70171157896646 2 10.372712418680418 5.2056862751568715 3 3.8907173368851695 2.9289138207469914 4 1.913170922280635 1.9203015007356221 5 1.0933169772715436 1.3717398480865532 6 0.7489602290941316 1.127627517623688 7 0.5293890803711017 0.929883790791264 8 0.42637028814295436 0.8559188252913394 9 0.3385712932239471 0.7646246598004158 >10 4.322173192087914 26.935719152339978 >50 1.5458470432437912 27.380381204065063 >100 0.28185990552290685 9.806133744183802 >500 0.005074400917761007 0.8464161337394728 >1k 0.0027678550460514583 1.2249419484725248 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT 4384 0.5053946032064428 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1678 0.1934425511360427 No Hit AATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT 1270 0.14640765193252336 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC 1219 0.14052828953208346 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGT 1019 0.1174719663931034 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1012 0.1166649950832391 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5950837002170752 0.0 2 0.0 0.0 0.0 0.8223037647517237 0.0 3 0.0 0.0 0.0 1.0718884627311829 0.0 4 0.0 0.0 0.0 2.2400370745676077 0.0 5 0.0 0.0 0.0 2.4157262568866353 0.0 6 0.0 0.0 0.0 3.523006175636153 0.0 7 0.0 0.0 0.0 4.318910450393744 0.0 8 0.0 0.0 0.0 5.06997017664602 0.0 9 0.0 0.0 0.0 6.0555127092217225 0.0 10 0.0 0.0 0.0 7.5069082508205165 0.0 11 0.0 0.0 0.0 8.813394801490821 0.0 12 0.0 0.0 0.0 9.432111232925351 0.0 13 0.0 0.0 0.0 9.71017048998145 0.0 14 0.0 0.0 0.0 10.01266944956487 0.0 15 0.0 0.0 0.0 10.286463286840258 0.0 16 0.0 0.0 0.0 10.831284202614356 0.0 17 0.0 0.0 0.0 11.462912175006716 0.0 18 0.0 0.0 0.0 12.315073878223417 0.0 19 0.0 0.0 0.0 12.66068816207673 0.0 20 0.0 0.0 0.0 13.074549162421421 0.0 21 0.0 0.0 0.0 13.511812330752178 0.0 22 0.0 0.0 0.0 13.98919350134476 0.0 23 0.0 0.0 0.0 14.476604172502798 0.0 24 0.0 0.0 0.0 14.857148785911665 0.0 25 0.0 0.0 0.0 15.189620965575756 0.0 26 0.0 0.0 0.0 15.489699011229582 0.0 27 0.0 0.0 0.0 15.8215947828152 0.0 28 0.0 0.0 0.0 16.173895400378814 0.0 29 0.0 0.0 0.0 16.542796570602498 0.0 30 0.0 0.0 0.0 17.069748835943887 0.0 31 0.0 0.0 0.0 17.415593683028586 0.0 32 0.0 0.0 0.0 17.795100761896197 0.0 33 0.0 0.0 0.0 18.17299389814408 0.0 34 0.0 0.0 0.0 18.522066630468238 0.0 35 0.0 0.0 0.0 18.9140241238309 0.0 36 0.0 0.0 0.0 19.266555304625907 0.0 37 0.0 0.0 0.0 19.605252691537522 0.0 38 0.0 0.0 0.0 19.9764594940751 0.0 39 0.0 0.0 0.0 20.366341918355253 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAT 20 7.0323277E-4 45.000004 30 ACGTTAG 30 2.164883E-6 45.000004 1 GGCGTAC 20 7.0323277E-4 45.000004 8 CCTCGAA 20 7.0323277E-4 45.000004 20 ATTCACG 30 2.164883E-6 45.000004 1 CACTACG 30 2.164883E-6 45.000004 1 CGTACCG 20 7.0323277E-4 45.000004 1 ACATGCG 20 7.0323277E-4 45.000004 1 TTACGTC 20 7.0323277E-4 45.000004 8 TTACGTA 20 7.0323277E-4 45.000004 34 CATCGCG 20 7.0323277E-4 45.000004 1 TATACGC 20 7.0323277E-4 45.000004 18 AGAATCG 20 7.0323277E-4 45.000004 14 CGGAATA 25 3.8900107E-5 45.0 10 AAACTCG 25 3.8900107E-5 45.0 1 TACCACG 35 1.2114651E-7 45.0 1 TAAACCG 35 1.2114651E-7 45.0 1 CGTCTAA 25 3.8900107E-5 45.0 31 CCGTCTA 25 3.8900107E-5 45.0 37 TCGTCTA 25 3.8900107E-5 45.0 30 >>END_MODULE