SRR3548531_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548531_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	571354
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	6061	1.060813436153418	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC	2655	0.4646856414762126	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	2210	0.38680047746230883	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGT	2183	0.3820748607693304	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1579	0.276361065118998	No Hit
CCCGACGGGATAACAGATAACCAACCATTCCCTTAAAAATCTCACATGCAC	1296	0.2268296012629648	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	1271	0.22245403025094776	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	1051	0.18394900534519756	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1006	0.17607297752356685	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	649	0.11358982347196309	No Hit
ACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	616	0.10781406973610055	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	578	0.10116320179783461	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTA	25	3.8883336E-5	45.000004	1
TCGCACA	25	3.8883336E-5	45.000004	35
CGACGTT	25	3.8883336E-5	45.000004	19
TTCGTAC	25	3.8883336E-5	45.000004	33
CGCGAAG	50	2.1827873E-11	45.000004	1
TCTAGCG	50	2.1827873E-11	45.000004	1
ATCGTTC	25	3.8883336E-5	45.000004	10
TCTCGCG	25	3.8883336E-5	45.000004	1
CTCGCAC	25	3.8883336E-5	45.000004	34
TCGTACA	25	3.8883336E-5	45.000004	34
ATCGCTC	25	3.8883336E-5	45.000004	10
TCAACGA	25	3.8883336E-5	45.000004	37
AATCGAC	25	3.8883336E-5	45.000004	16
AGCGTTC	20	7.0303044E-4	45.0	41
AACGTAC	20	7.0303044E-4	45.0	19
CCTTATC	20	7.0303044E-4	45.0	42
CGACGGA	20	7.0303044E-4	45.0	3
CGTGCAA	20	7.0303044E-4	45.0	26
GACACGC	45	3.8380676E-10	45.0	45
CGGCCGA	20	7.0303044E-4	45.0	17