SRR3548526_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548526_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475346
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC	9277	1.9516310224552222	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGT	8131	1.7105434778035369	No Hit
AATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT	7384	1.5533947903211556	No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT	5569	1.1715676580848478	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTT	2101	0.44199383186142305	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1750	0.368152882321509	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTAAGTCGTC	1666	0.3504815439700765	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT	1599	0.33638654790405303	No Hit
AACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG	1429	0.3006231250499636	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTAT	1407	0.2959949173864932	No Hit
AAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT	954	0.20069591413412546	No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	765	0.1609354028434025	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTT	748	0.15735906055799356	No Hit
AATGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC	606	0.12748608382104823	No Hit
AATGATCCGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC	568	0.1194919069477812	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATGG	45	3.8380676E-10	45.000004	2
CCGGCGA	45	3.8380676E-10	45.000004	7
CGTAGGT	45	3.8380676E-10	45.000004	1
TCTAACG	45	3.8380676E-10	45.000004	1
GTAACGG	90	0.0	45.000004	2
CTTCGCC	25	3.887341E-5	45.0	36
CTAGACG	20	7.029108E-4	45.0	1
CGGGTCG	20	7.029108E-4	45.0	6
CGGGTAT	50	2.1827873E-11	45.0	6
ACACGTT	25	3.887341E-5	45.0	31
TACTTCG	35	1.209919E-7	45.0	13
CGAGTGG	20	7.029108E-4	45.0	28
ACGTTAG	20	7.029108E-4	45.0	1
CATGACG	40	6.8012014E-9	45.0	1
TAGAACG	20	7.029108E-4	45.0	40
AGCCAAT	25	3.887341E-5	45.0	42
GATCCGA	20	7.029108E-4	45.0	34
ATAGCGG	55	1.8189894E-12	45.0	2
GGATCGA	25	3.887341E-5	45.0	8
CACGATC	35	1.209919E-7	45.0	30