SRR3548524_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548524_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	963371
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	4585	0.4759329479504781	TruSeq Adapter, Index 14 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC	2084	0.21632372159842883	No Hit
AATCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT	1912	0.19846974841468135	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGT	1839	0.19089219002855598	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGCA	20	7.032716E-4	45.000004	27
CTATACG	20	7.032716E-4	45.000004	1
CGACCTT	20	7.032716E-4	45.000004	16
GTGATCG	20	7.032716E-4	45.000004	9
CCGTCCA	20	7.032716E-4	45.000004	27
AAACGCG	105	0.0	45.000004	1
ACTAGCG	80	0.0	45.000004	1
TACGCAT	20	7.032716E-4	45.000004	40
CGCAGTA	20	7.032716E-4	45.000004	12
CGATGTC	20	7.032716E-4	45.000004	12
CGCGTTG	20	7.032716E-4	45.000004	1
CGTCCCG	20	7.032716E-4	45.000004	30
TAATGCG	20	7.032716E-4	45.000004	1
TCGAACG	40	6.8139343E-9	45.000004	1
CCGCACG	80	0.0	45.000004	1
CTATCGG	25	3.8903345E-5	45.0	2
CGCGCCC	25	3.8903345E-5	45.0	25
CCTCGCG	50	2.1827873E-11	45.0	1
CGCTCCG	55	1.8189894E-12	45.0	1
CTACGCC	25	3.8903345E-5	45.0	32