SRR3548519_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548519_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684553
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT	4866	0.7108288182215255	TruSeq Adapter, Index 21 (95% over 23bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1103	0.1611270420259644	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCT	1029	0.15031706821823876	No Hit
AATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCT	1021	0.14914842240118734	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1012	0.1478336958570045	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCC	1000	0.14608072713142736	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGT	904	0.13205697732681035	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	888	0.1297196856927075	TruSeq Adapter, Index 14 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTT	761	0.11116743334701623	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGACG	30	2.16421E-6	45.000004	1
CTAAGCG	30	2.16421E-6	45.000004	1
TCTAGCG	30	2.16421E-6	45.000004	1
ATACACG	60	0.0	45.000004	1
TAATACG	20	7.031285E-4	45.0	1
ATCTCGT	20	7.031285E-4	45.0	19
CGTATTA	20	7.031285E-4	45.0	31
TCCGCGA	25	3.8891463E-5	45.0	33
GTATTCG	25	3.8891463E-5	45.0	1
CGTATAG	20	7.031285E-4	45.0	1
CGAAATC	20	7.031285E-4	45.0	16
CGACGGT	25	3.8891463E-5	45.0	28
GTGATCG	20	7.031285E-4	45.0	27
CGCGAAT	25	3.8891463E-5	45.0	35
TGACGGA	25	3.8891463E-5	45.0	15
CATTCCG	20	7.031285E-4	45.0	1
ATCCGTG	20	7.031285E-4	45.0	15
TTATACG	25	3.8891463E-5	45.0	1
ATTCCGG	40	6.8084773E-9	45.0	2
ACGATTG	20	7.031285E-4	45.0	1