SRR3548502_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548502_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	661739
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	5082	0.767976498287089	TruSeq Adapter, Index 16 (95% over 23bp)
AATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	2689	0.4063535623561555	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGT	2212	0.3342707623398349	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCC	2167	0.3274704981873518	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1013	0.15308150192145242	No Hit
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	1001	0.15126809814745693	TruSeq Adapter, Index 19 (95% over 21bp)
AAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	923	0.13948097361648626	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	898	0.135703049087329	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCA	35	1.210883E-7	45.0	15
CTCGTCA	20	7.0311147E-4	45.0	27
CGAAACG	20	7.0311147E-4	45.0	1
GGCAACG	40	6.8066583E-9	45.0	1
CGACCAG	40	6.8066583E-9	45.0	1
ATTCGGT	20	7.0311147E-4	45.0	34
CACGAAC	20	7.0311147E-4	45.0	36
CGGATTA	20	7.0311147E-4	45.0	6
TATTCGG	20	7.0311147E-4	45.0	33
TCGTCAA	20	7.0311147E-4	45.0	28
GTCGTAA	20	7.0311147E-4	45.0	24
CGCAGAT	20	7.0311147E-4	45.0	14
CGTACAT	70	0.0	45.0	1
CTTTACG	20	7.0311147E-4	45.0	1
CACGTGT	45	3.8380676E-10	45.0	22
GCGCTAA	20	7.0311147E-4	45.0	29
TTCGATG	20	7.0311147E-4	45.0	1
TTATTCG	20	7.0311147E-4	45.0	32
CGTCAAA	20	7.0311147E-4	45.0	29
CGATACG	20	7.0311147E-4	45.0	1