SRR3548501_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548501_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	667477
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	5168	0.7742588883212456	TruSeq Adapter, Index 16 (95% over 23bp)
AATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	2646	0.39641815373413614	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCC	2304	0.3451804331834655	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGT	2190	0.3281011929999086	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1073	0.1607546027803205	No Hit
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	939	0.14067900466982383	TruSeq Adapter, Index 19 (95% over 21bp)
AAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	923	0.138281918328272	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	906	0.13573501409037317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTA	25	3.8890408E-5	45.000004	38
CGAGTTA	25	3.8890408E-5	45.000004	14
ACGTTAT	25	3.8890408E-5	45.000004	39
CTATCGG	25	3.8890408E-5	45.000004	2
CGTTGAT	25	3.8890408E-5	45.000004	25
GCTATCG	25	3.8890408E-5	45.000004	1
GTAATCG	25	3.8890408E-5	45.000004	1
TCAATCG	25	3.8890408E-5	45.000004	28
CTACGCG	50	2.1827873E-11	45.000004	1
AATTCGG	25	3.8890408E-5	45.000004	2
GCGGCTA	25	3.8890408E-5	45.000004	29
AATTACG	25	3.8890408E-5	45.000004	1
TATAGCG	30	2.164128E-6	45.000004	1
CGCGTAG	25	3.8890408E-5	45.000004	1
AACTACG	30	2.164128E-6	45.000004	1
CAATCGT	25	3.8890408E-5	45.000004	29
AATACCG	30	2.164128E-6	45.000004	1
AGTACGG	50	2.1827873E-11	45.000004	2
AGTACCG	30	2.164128E-6	45.000004	1
ATGATCG	20	7.0311595E-4	45.0	9