SRR3548497_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548497_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443758
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	1762	0.3970632642115748	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	974	0.2194890007616764	No Hit
AAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	638	0.14377205594039993	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	487	0.1097445003808382	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	457	0.10298405887893852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	45	3.8380676E-10	45.000004	13
CCGTTGG	65	0.0	45.000004	2
ACGCGAA	25	3.886922E-5	45.0	1
ACAACCG	25	3.886922E-5	45.0	1
TTGGCGA	25	3.886922E-5	45.0	16
AGCCGAT	20	7.0286E-4	45.0	37
ACACGTA	20	7.0286E-4	45.0	11
TACCCGC	25	3.886922E-5	45.0	20
ACACGAT	25	3.886922E-5	45.0	12
TCACCGC	20	7.0286E-4	45.0	35
CTCCGTA	20	7.0286E-4	45.0	25
CGTATAC	20	7.0286E-4	45.0	14
CACGGCA	20	7.0286E-4	45.0	4
CCCTAGT	25	3.886922E-5	45.0	42
ACCGCGT	20	7.0286E-4	45.0	37
TTATGCG	20	7.0286E-4	45.0	1
CGACCGT	20	7.0286E-4	45.0	19
AAACGGT	20	7.0286E-4	45.0	3
AACGGAC	20	7.0286E-4	45.0	10
TACGCTT	20	7.0286E-4	45.0	8