SRR3548492_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548492_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	460479
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	2004	0.4351989993028998	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	741	0.16091939046080278	No Hit
AATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT	649	0.14094019488402296	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	561	0.12182965998449441	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGT	557	0.1209609993072431	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	554	0.12030950379930463	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	502	0.10901691499503778	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGG	90	0.0	45.000004	2
CGTACAG	45	3.8380676E-10	45.000004	1
CGTAAGG	45	3.8380676E-10	45.000004	2
CTTGTCG	25	3.8871505E-5	45.0	37
CAGCGCG	40	6.7993824E-9	45.0	1
CTCACCG	20	7.028879E-4	45.0	1
ATCTACG	20	7.028879E-4	45.0	1
CTCCGAT	20	7.028879E-4	45.0	11
CGGTTTT	20	7.028879E-4	45.0	22
CATTGCG	25	3.8871505E-5	45.0	1
CGTTGAG	20	7.028879E-4	45.0	1
TTGTCGT	25	3.8871505E-5	45.0	38
TGAACGA	25	3.8871505E-5	45.0	34
TGAACCG	20	7.028879E-4	45.0	1
TCCTCCG	20	7.028879E-4	45.0	21
CGACATG	25	3.8871505E-5	45.0	1
AAGCGCG	40	6.7993824E-9	45.0	1
CGCTGCG	25	3.8871505E-5	45.0	1
CTGGTCG	20	7.028879E-4	45.0	13
TAGCACG	40	6.7993824E-9	45.0	1