SRR3548490_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548490_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	771711
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	5838	0.7565008144240526	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	5232	0.6779740084047008	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT	5135	0.6654045361540785	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	3897	0.5049817872234554	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	1283	0.16625394739740654	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT	1016	0.13165550316115748	No Hit
AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	983	0.12737929095218287	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	890	0.11532814745416355	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAGCTATTC	819	0.1061278120954606	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT	773	0.10016703144052631	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGTCG	30	2.16457E-6	45.000004	1
TGATTCG	30	2.16457E-6	45.000004	15
TCATACG	30	2.16457E-6	45.000004	1
GTAACGA	30	2.16457E-6	45.000004	29
ATTTACG	25	3.8896098E-5	45.0	1
AACGTAG	40	6.8102963E-9	45.0	1
TAATACG	40	6.8102963E-9	45.0	1
AGGTACG	25	3.8896098E-5	45.0	1
TCGTTAC	20	7.031845E-4	45.0	33
CGTATTG	20	7.031845E-4	45.0	1
ACGTTAG	20	7.031845E-4	45.0	1
TTAGCGA	20	7.031845E-4	45.0	27
TAGCGAT	20	7.031845E-4	45.0	28
ACGATAG	35	1.2112287E-7	45.0	1
CGTAGTC	20	7.031845E-4	45.0	16
TACGATA	25	3.8896098E-5	45.0	35
CTACGCG	20	7.031845E-4	45.0	1
ACTACGC	20	7.031845E-4	45.0	18
TCCACGA	20	7.031845E-4	45.0	36
CGCAGTC	25	3.8896098E-5	45.0	16