SRR3548489_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548489_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	780292
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	5796	0.7427988496614089	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	5183	0.6642385158376608	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT	5082	0.651294643543699	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	4132	0.5295453496896034	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	1324	0.16968006848718173	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT	1047	0.13418053754235593	No Hit
AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1000	0.12815715142536382	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	819	0.10496070701737298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTCGC	20	7.031892E-4	45.000004	37
AGGCGTA	20	7.031892E-4	45.000004	38
TAGCCCG	30	2.164601E-6	45.000004	1
ATCCGCG	30	2.164601E-6	45.000004	1
TACGCCG	20	7.031892E-4	45.000004	1
TCTCGAC	20	7.031892E-4	45.000004	45
CCATACG	35	1.211265E-7	45.000004	1
AACGATC	30	2.164601E-6	45.000004	13
CATACCG	20	7.031892E-4	45.000004	1
TATAGCG	20	7.031892E-4	45.000004	1
TCGAGAC	20	7.031892E-4	45.000004	29
CACGTTG	20	7.031892E-4	45.000004	40
CGACTAG	40	6.8102963E-9	45.000004	1
ATACCCG	45	3.8380676E-10	45.000004	1
ACGTTAG	25	3.8896495E-5	45.0	1
ATTACCG	25	3.8896495E-5	45.0	1
TCGGTAG	25	3.8896495E-5	45.0	15
TAGCACG	85	0.0	42.352943	1
CCTAACG	60	3.6379788E-12	41.250004	1
TACGAGT	55	6.002665E-11	40.909092	15